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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0119100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phospholipase D beta 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0254) R2 : 0.00341
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0667 (0.0534) R2dN8 : 0.0044 R2N8 : 0.00341
σ : 0.478
deviance : 104.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.86 0.472 3.28 0.1 0.316 0.243 -0.155 0.103 0.0283 4.08 89.99 274 -- --
100.9 0.468 3.27 0.093 0.316 0.244 -0.221 -- 0.0275 4.07 89.6 273 -- --
100.91 0.468 3.28 0.107 0.32 0.246 -- 0.18 0.0285 4.11 89.75 258 -- --
101.03 0.468 3.27 0.095 0.32 0.253 -- -- 0.0257 4.22 89.42 273 -- --
102.71 0.472 3.27 0.092 -- 0.303 -- -0.134 0.0354 -- 88 1139 -- --
103.03 0.476 3.27 0.0403 0.142 -- -0.399 -- 0.0671 2.6 -- -- -- --
103.55 0.477 3.27 0.0503 0.146 -- -- -- 0.0691 3.34 -- -- -- --
102.72 0.472 3.28 0.0968 -- 0.31 -- -- 0.0384 -- 87.83 1137 -- --
101.27 0.469 3.28 -- 0.313 0.241 -- -- 0.0188 4.19 89.37 273 -- --
104.77 0.478 3.27 0.0565 -- -- -- -- 0.073 -- -- -- -- --
103.62 0.476 3.27 -- 0.147 -- -- -- 0.0635 3.34 -- -- -- --
102.96 0.473 3.28 -- -- 0.295 -- -- 0.0294 -- 87.53 1137 -- --
104.85 0.478 3.27 -- -- -- -- -- 0.0667 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.43 temperature 10.0 720 > th dose independent rect. 3 8
2 88.43 atmosphere 995.0 720 > th dose independent rect. 3 8
3 88.43 temperature 10.0 720 > th dose independent rect. 11 16
4 88.49 temperature 10.0 720 > th dose independent rect. 15 8
5 88.49 temperature 10.0 720 > th dose independent rect. 23 16
6 88.50 precipitation 0.1 720 < th dose independent rect. 15 8
7 88.50 precipitation 0.1 720 < th dose dependent rect. 15 8
8 88.67 wind 9.0 720 < th dose independent rect. 3 8
9 88.79 humidity 50.0 720 > th dose independent rect. 3 8
10 89.20 atmosphere 995.0 720 > th dose independent rect. 23 16
11 89.34 atmosphere 1000.0 30 > th dose independent rect. 23 23
12 89.48 atmosphere 1015.0 720 < th dose independent rect. 3 8
14 89.68 atmosphere 1015.0 30 < th dose dependent rect. 2 1
16 89.80 precipitation 0.1 720 < th dose independent rect. 11 16
17 89.80 precipitation 0.1 720 < th dose dependent rect. 11 16
19 89.86 temperature 25.0 30 < th dose independent rect. 2 1
20 89.89 wind 3.0 30 < th dose independent rect. 2 1
23 89.89 wind 5.0 30 < th dose dependent rect. 2 1
27 89.90 temperature 10.0 30 > th dose independent rect. 2 1
30 89.90 humidity 50.0 30 > th dose independent rect. 2 1
33 89.90 atmosphere 995.0 30 > th dose independent rect. 2 1
34 89.90 atmosphere 1010.0 30 < th dose independent rect. 2 1
36 89.90 radiation 1.0 30 < th dose independent rect. 2 1
41 89.90 precipitation 0.1 30 < th dose independent rect. 2 1
42 89.90 temperature 10.0 30 > th dose independent rect. 3 23
44 89.90 radiation 1.0 30 < th dose dependent rect. 2 1
49 89.90 precipitation 0.1 30 < th dose dependent rect. 2 1
50 89.92 temperature 10.0 30 > th dose dependent rect. 2 1
51 89.92 humidity 50.0 30 > th dose dependent rect. 2 1
53 89.92 radiation 10.0 43200 < th dose dependent rect. 23 1
54 89.93 temperature 30.0 30 < th dose dependent rect. 2 1
66 90.01 atmosphere 1005.0 30 > th dose dependent rect. 2 1
73 90.08 atmosphere 995.0 30 > th dose dependent rect. 2 1
107 90.20 wind 5.0 10 < th dose dependent rect. 22 1
110 90.23 wind 1.0 30 > th dose independent rect. 2 1
115 90.27 radiation 1.0 4320 < th dose dependent rect. 23 1
118 90.32 wind 9.0 30 < th dose independent rect. 3 23
121 90.34 radiation 40.0 720 < th dose independent rect. 15 8
122 90.35 wind 3.0 10 < th dose independent rect. 22 1
126 90.38 temperature 25.0 10 > th dose dependent rect. 22 1
127 90.38 humidity 90.0 30 < th dose dependent rect. 22 1
133 90.42 humidity 90.0 30 < th dose independent rect. 22 1
134 90.42 atmosphere 995.0 720 > th dose independent rect. 11 16
135 90.42 temperature 10.0 30 > th dose dependent rect. 22 1
138 90.42 atmosphere 1015.0 30 < th dose dependent rect. 22 1
141 90.43 temperature 10.0 30 > th dose independent rect. 22 1
143 90.43 temperature 30.0 30 < th dose independent rect. 22 1
144 90.43 humidity 50.0 30 > th dose independent rect. 22 1
147 90.43 atmosphere 995.0 30 > th dose independent rect. 22 1
149 90.43 atmosphere 1010.0 30 < th dose independent rect. 22 1
151 90.43 radiation 1.0 30 < th dose independent rect. 22 1
156 90.43 precipitation 0.1 30 < th dose independent rect. 22 1
157 90.43 temperature 10.0 30 > th dose independent rect. 23 23
158 90.43 radiation 1.0 30 < th dose dependent rect. 22 1
163 90.43 precipitation 0.1 30 < th dose dependent rect. 22 1
165 90.44 atmosphere 995.0 30 > th dose dependent rect. 22 1
170 90.45 humidity 50.0 30 > th dose dependent rect. 22 1
172 90.46 wind 9.0 1440 < th dose independent rect. 23 1
173 90.46 temperature 10.0 1440 > th dose independent rect. 23 1
176 90.46 temperature 30.0 1440 < th dose independent rect. 23 1
180 90.46 humidity 50.0 1440 > th dose independent rect. 23 1
192 90.46 atmosphere 995.0 1440 > th dose independent rect. 23 1
193 90.46 radiation 1.0 1440 < th dose independent rect. 23 1
213 90.46 temperature 10.0 1440 > th dose independent rect. 24 23
225 90.47 temperature 25.0 30 > th dose independent rect. 22 1
235 90.49 wind 1.0 30 > th dose independent rect. 22 1
239 90.50 atmosphere 995.0 720 > th dose independent rect. 15 8
241 90.51 temperature 30.0 30 < th dose dependent rect. 22 1
272 90.61 precipitation 0.1 30 < th dose independent rect. 23 23
274 90.61 precipitation 0.1 30 < th dose dependent rect. 23 23
279 90.68 wind 1.0 30 > th dose dependent rect. 22 1
290 90.82 wind 9.0 30 < th dose independent rect. 23 23
299 91.17 precipitation 0.1 720 < th dose independent rect. 3 8
300 91.17 precipitation 0.1 720 < th dose dependent rect. 3 8
309 91.52 precipitation 0.1 1440 < th dose independent rect. 23 1
311 91.52 precipitation 0.1 1440 < th dose dependent rect. 23 1
317 91.87 precipitation 0.1 720 < th dose independent rect. 23 16
318 91.87 precipitation 0.1 720 < th dose dependent rect. 23 16
319 92.01 wind 9.0 720 < th dose independent rect. 15 8
326 92.26 atmosphere 995.0 30 > th dose independent rect. 3 23
334 92.88 humidity 50.0 30 > th dose independent rect. 23 23
338 93.24 wind 1.0 10 > th dose independent rect. 23 23
342 93.47 wind 9.0 720 < th dose independent rect. 23 16
344 93.54 wind 1.0 720 > th dose independent rect. 15 8
350 93.69 precipitation 0.1 30 < th dose independent rect. 3 23
351 93.69 precipitation 0.1 30 < th dose dependent rect. 3 23
359 94.09 temperature 25.0 270 > th dose independent rect. 19 8
367 94.48 humidity 50.0 720 > th dose independent rect. 23 16
371 94.67 radiation 1.0 43200 < th dose dependent rect. 3 1
373 94.72 wind 9.0 720 < th dose independent rect. 11 16
388 95.10 wind 9.0 1440 < th dose independent rect. 3 1
389 95.10 temperature 10.0 1440 > th dose independent rect. 3 1
392 95.10 temperature 30.0 1440 < th dose independent rect. 3 1
396 95.10 humidity 50.0 1440 > th dose independent rect. 3 1
405 95.10 atmosphere 995.0 1440 > th dose independent rect. 3 1
406 95.10 radiation 1.0 1440 < th dose independent rect. 3 1
426 95.10 temperature 10.0 1440 > th dose independent rect. 4 23
429 95.10 radiation 1.0 1440 < th dose dependent rect. 3 1
454 95.64 humidity 50.0 30 > th dose independent rect. 3 23
461 95.77 temperature 25.0 270 > th dose dependent rect. 19 8
475 96.05 temperature 30.0 30 < th dose independent rect. 23 23
502 96.33 humidity 90.0 90 < th dose independent rect. 2 1
507 96.43 temperature 20.0 30 > th dose dependent rect. 22 5
552 96.72 wind 3.0 30 < th dose independent rect. 20 3
557 96.76 atmosphere 1015.0 30 < th dose independent rect. 23 23
572 96.98 temperature 30.0 720 < th dose independent rect. 3 8
573 96.98 radiation 10.0 30 < th dose independent rect. 23 23
575 97.01 wind 5.0 30 < th dose dependent rect. 20 3
580 97.07 temperature 25.0 720 > th dose dependent rect. 3 5
610 97.22 atmosphere 1015.0 720 < th dose independent rect. 23 16
612 97.23 temperature 10.0 30 > th dose dependent rect. 23 23
618 97.29 radiation 10.0 10 < th dose independent rect. 3 23
622 97.33 atmosphere 1000.0 90 > th dose independent rect. 23 12
624 97.34 atmosphere 1015.0 30 < th dose independent rect. 3 23
640 97.45 temperature 25.0 720 > th dose independent rect. 3 6
641 97.46 temperature 25.0 270 > th dose dependent rect. 19 1
652 97.50 radiation 20.0 10 < th dose dependent rect. 3 23
653 97.50 radiation 20.0 10 < th dose dependent rect. 23 23
654 97.51 radiation 40.0 30 < th dose dependent rect. 23 12
667 97.59 radiation 30.0 30 < th dose independent rect. 23 12
694 97.75 wind 1.0 10 > th dose independent rect. 23 8
705 97.79 atmosphere 1015.0 1440 < th dose independent rect. 3 1
726 97.88 wind 1.0 30 > th dose dependent rect. 2 1
728 97.88 temperature 25.0 720 > th dose dependent rect. 24 9
739 97.93 temperature 25.0 270 > th dose independent sin 12 NA
740 97.93 humidity 90.0 90 < th dose independent rect. 1 22
751 97.98 temperature 25.0 270 > th dose independent rect. 19 1
775 98.08 temperature 25.0 270 < th dose independent rect. 19 10
795 98.12 temperature 25.0 720 > th dose dependent rect. 23 11
829 98.25 atmosphere 1015.0 90 < th dose independent rect. 11 12
833 98.26 wind 1.0 10 > th dose independent rect. 23 12
853 98.34 temperature 30.0 90 < th dose independent rect. 11 12
874 98.36 wind 1.0 10 < th dose independent rect. 13 14
908 98.37 radiation 40.0 30 < th dose dependent rect. 23 10
916 98.40 temperature 30.0 90 < th dose independent rect. 23 12
917 98.41 wind 9.0 90 < th dose independent rect. 23 12
937 98.45 temperature 25.0 270 < th dose independent sin 12 NA
939 98.46 temperature 10.0 90 > th dose independent rect. 11 12
940 98.46 temperature 10.0 90 > th dose independent rect. 23 12
941 98.46 humidity 50.0 90 > th dose independent rect. 23 12
944 98.48 wind 1.0 10 < th dose independent rect. 17 10
949 98.48 precipitation 0.1 90 < th dose independent rect. 11 12
954 98.48 precipitation 0.1 90 < th dose dependent rect. 11 12
956 98.49 atmosphere 1015.0 720 < th dose independent rect. 15 8
957 98.49 atmosphere 1000.0 30 > th dose independent rect. 23 10
959 98.49 precipitation 0.1 90 < th dose independent rect. 23 12
961 98.49 precipitation 0.1 90 < th dose dependent rect. 23 12
962 98.49 temperature 10.0 90 > th dose dependent rect. 3 16
963 98.50 wind 1.0 10 < th dose independent rect. 22 5
964 98.50 atmosphere 995.0 90 > th dose independent rect. 11 12
979 98.52 temperature 10.0 720 > th dose dependent rect. 23 1
981 98.53 wind 1.0 10 > th dose independent rect. 23 10
998 98.56 humidity 70.0 30 > th dose independent rect. 23 10
1000 98.56 wind 9.0 30 < th dose dependent rect. 3 23