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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0118500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.9 (0.0354) R2 : 0.0726
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.53 (0.0895) R2dC : 0.0716 R2C : 0.071
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0585 (0.0743) R2dN8 : 0.00163 R2N8 : 0.00101
σ : 0.666
deviance : 202.84
__
_____
C
peak time of C : 20.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
187.95 0.644 5.94 -0.00682 0.492 -1.01 -0.0853 -0.29 -0.231 22.6 29.2 211 -- --
188.06 0.639 5.94 -0.0396 0.494 -0.989 -0.138 -- -0.234 22.6 29.28 209 -- --
187.98 0.639 5.94 0.00238 0.492 -1.01 -- -0.323 -0.23 22.7 29.2 210 -- --
188.11 0.639 5.94 -0.053 0.491 -1 -- -- -0.243 22.6 29.2 211 -- --
197.58 0.655 5.94 -0.109 -- -1.09 -- 0.169 -0.256 -- 30.2 577 -- --
201.69 0.666 5.9 0.197 0.53 -- -0.165 -- -0.036 20.3 -- -- -- --
201.77 0.665 5.9 0.202 0.531 -- -- -- -0.0361 20.3 -- -- -- --
197.58 0.655 5.93 -0.073 -- -1.08 -- -- -0.248 -- 29.96 567 -- --
188.18 0.639 5.94 -- 0.491 -0.981 -- -- -0.233 22.6 29.28 210 -- --
217.37 0.689 5.88 0.198 -- -- -- -- -0.0419 -- -- -- -- --
202.84 0.666 5.9 -- 0.53 -- -- -- -0.0585 20.3 -- -- -- --
197.73 0.655 5.93 -- -- -1.06 -- -- -0.238 -- 30 557 -- --
218.4 0.69 5.89 -- -- -- -- -- -0.0639 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.71 temperature 10 90 > th dose dependent rect. 7 23
2 183.93 temperature 20 30 > th dose dependent rect. 7 22
4 184.05 temperature 15 90 > th dose dependent rect. 8 20
36 185.29 temperature 30 30 < th dose dependent rect. 6 12
81 186.65 temperature 20 30 > th dose dependent rect. 9 17
89 186.78 temperature 15 270 > th dose dependent rect. 16 22
110 187.02 temperature 25 270 < th dose independent rect. 2 21
113 187.04 temperature 25 270 < th dose independent rect. 3 19
129 187.25 temperature 30 90 < th dose dependent rect. 19 23
136 187.39 temperature 20 90 > th dose dependent rect. 18 23
152 187.56 temperature 20 4320 < th dose independent rect. 13 12
164 187.61 temperature 30 90 < th dose dependent rect. 14 21
175 187.68 temperature 30 270 < th dose dependent rect. 11 22
208 187.98 temperature 20 4320 < th dose dependent rect. 21 3
217 188.01 temperature 20 4320 > th dose independent rect. 13 12
224 188.02 temperature 30 270 < th dose dependent rect. 9 23
232 188.10 temperature 20 4320 < th dose independent sin 18 NA
241 188.16 temperature 25 270 > th dose independent rect. 7 16
264 188.22 temperature 30 270 < th dose dependent rect. 23 23
299 188.36 temperature 30 270 < th dose dependent rect. 2 23
305 188.39 temperature 30 30 < th dose independent rect. 6 12
310 188.39 temperature 30 30 < th dose dependent rect. 23 23
321 188.45 temperature 30 90 < th dose dependent no NA NA
325 188.46 temperature 30 10 < th dose dependent rect. 6 18
337 188.50 atmosphere 1005 90 > th dose dependent rect. 6 2
344 188.51 temperature 30 90 < th dose dependent rect. 6 17
352 188.53 temperature 30 90 < th dose dependent rect. 5 23
359 188.55 temperature 20 4320 > th dose independent sin 18 NA
405 188.70 temperature 25 270 > th dose independent rect. 15 23
423 188.75 temperature 30 270 < th dose dependent rect. 3 19
424 188.76 humidity 80 90 < th dose independent rect. 1 6
435 188.80 temperature 30 720 < th dose dependent rect. 6 1
447 188.83 humidity 80 10 < th dose dependent rect. 2 4
457 188.85 humidity 80 90 < th dose dependent rect. 1 6
463 188.86 temperature 25 1440 < th dose dependent rect. 6 19
466 188.87 temperature 25 270 < th dose independent rect. 11 23
468 188.88 temperature 20 4320 < th dose independent rect. 19 2
469 188.88 humidity 80 10 < th dose independent rect. 1 6
486 188.91 temperature 25 90 > th dose independent rect. 7 22
500 188.95 temperature 25 270 > th dose independent rect. 4 20
510 188.96 temperature 25 1440 < th dose dependent rect. 5 12
519 188.97 temperature 30 10 < th dose dependent rect. 6 22
542 189.00 temperature 20 270 > th dose dependent rect. 21 15
566 189.05 humidity 80 10 < th dose dependent rect. 23 8
583 189.07 temperature 20 90 > th dose dependent no NA NA
585 189.07 temperature 30 270 < th dose dependent rect. 3 15
613 189.11 temperature 25 1440 < th dose dependent sin 0 NA
633 189.13 temperature 30 30 < th dose dependent rect. 17 23
711 189.23 temperature 25 270 > th dose independent rect. 1 22
745 189.26 temperature 25 1440 > th dose independent rect. 7 6
817 189.32 temperature 25 1440 < th dose dependent rect. 22 20
819 189.32 temperature 20 90 > th dose dependent rect. 21 23
821 189.33 temperature 25 270 < th dose independent rect. 20 23
868 189.38 temperature 25 1440 < th dose dependent no NA NA
877 189.38 temperature 25 1440 < th dose dependent rect. 13 23
893 189.39 temperature 25 1440 < th dose dependent rect. 9 23
894 189.39 temperature 30 270 < th dose dependent rect. 17 23
895 189.40 temperature 10 30 > th dose dependent no NA NA
933 189.44 temperature 25 270 < th dose independent no NA NA
965 189.47 temperature 10 4320 > th dose dependent rect. 23 1