FiT-DB / Search/ Help/ Sample detail

Os03g0117300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-glucanase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.64 (0.0407) R2 : 0.473
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.94 (0.102) R2dC : 0.419 R2C : 0.418
β3 : -0.653 (0.114) R2dE : 0.0515 R2E : 0.0239
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.389 (0.096) R2dN8 : 0.0411 R2N8 : -0.0116
σ : 0.735
deviance : 248.86
__
_____
C
peak time of C : 5.09
E
wheather : temperature
threshold : 33.1
memory length : 13170
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
234.32 0.719 7.39 0.987 1.91 0.189 0.195 -8.46 0.0729 5.19 29.5 4030 -- --
257.77 0.748 7.55 -0.6 1.86 -0.489 1.26 -- -0.153 4.77 32.9 27511 -- --
234.38 0.713 7.39 0.996 1.91 0.154 -- -8.17 0.0901 5.16 29.42 3995 -- --
240.44 0.722 7.64 -0.369 1.82 -0.675 -- -- -0.384 4.83 33.1 13170 -- --
423.43 0.958 7.38 1.35 -- 0.104 -- -9.11 0.202 -- 29.28 4107 -- --
262.5 0.76 7.59 -0.471 1.97 -- 0.285 -- -0.203 5.11 -- -- -- --
262.7 0.759 7.59 -0.472 1.97 -- -- -- -0.205 5.08 -- -- -- --
431.23 0.967 7.64 -0.71 -- -0.82 -- -- -0.519 -- 33.1 12930 -- --
248.86 0.735 7.64 -- 1.94 -0.653 -- -- -0.389 5.09 33.1 13170 -- --
466.71 1.01 7.61 -0.401 -- -- -- -- -0.155 -- -- -- -- --
268.57 0.767 7.58 -- 1.96 -- -- -- -0.152 5.09 -- -- -- --
443.6 0.981 7.64 -- -- -0.764 -- -- -0.4 -- 33 12900 -- --
470.96 1.01 7.6 -- -- -- -- -- -0.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 221.19 temperature 30 720 < th dose independent rect. 15 2
3 223.90 wind 5 270 < th dose independent rect. 14 11
4 223.94 atmosphere 1005 270 > th dose independent rect. 15 10
5 224.43 atmosphere 1005 720 > th dose independent rect. 15 3
9 225.43 atmosphere 1010 270 < th dose dependent rect. 15 15
46 228.21 atmosphere 995 90 > th dose dependent rect. 17 10
50 228.37 atmosphere 995 270 > th dose dependent rect. 15 10
51 228.41 atmosphere 1005 720 > th dose independent rect. 15 6
62 228.77 temperature 30 720 < th dose independent rect. 14 13
76 229.27 temperature 30 720 < th dose independent rect. 14 11
78 229.36 temperature 30 4320 > th dose independent rect. 13 1
95 229.94 wind 9 270 < th dose dependent rect. 14 11
99 230.03 temperature 30 4320 < th dose independent rect. 13 1
110 230.41 wind 5 270 < th dose independent rect. 11 14
123 230.77 atmosphere 1015 30 < th dose dependent rect. 19 14
169 231.76 temperature 30 720 < th dose independent rect. 12 21
182 232.04 atmosphere 995 720 > th dose dependent rect. 15 3
183 232.09 temperature 30 720 < th dose independent rect. 7 11
188 232.20 temperature 30 720 < th dose independent rect. 6 13
198 232.36 atmosphere 1015 30 < th dose dependent rect. 12 21
207 232.58 temperature 30 720 < th dose independent rect. 6 20
214 232.69 temperature 30 720 < th dose independent rect. 13 18
219 232.79 humidity 70 270 > th dose independent rect. 14 11
247 233.05 temperature 30 720 < th dose independent rect. 3 22
281 233.42 radiation 20 4320 > th dose independent rect. 16 16
304 233.67 temperature 30 720 < th dose independent sin 13 NA
310 233.74 humidity 70 720 > th dose independent rect. 15 2
318 233.79 wind 5 270 < th dose independent rect. 6 19
320 233.82 temperature 30 720 < th dose independent rect. 1 23
321 233.84 radiation 40 4320 < th dose independent rect. 14 21
329 233.96 temperature 30 720 < th dose independent sin 0 NA
335 233.99 wind 3 43200 < th dose dependent rect. 3 3
340 234.05 wind 5 270 < th dose independent sin 18 NA
341 234.05 humidity 70 14400 < th dose independent rect. 12 1
353 234.10 humidity 60 270 > th dose dependent rect. 15 10
361 234.13 temperature 30 720 < th dose independent sin 16 NA
367 234.16 humidity 70 14400 < th dose independent rect. 11 8
371 234.17 humidity 70 14400 < th dose independent rect. 11 20
379 234.18 humidity 70 14400 < th dose independent rect. 11 11
401 234.26 radiation 30 4320 > th dose dependent rect. 9 1
420 234.32 humidity 60 14400 > th dose independent rect. 12 1
426 234.34 humidity 70 14400 < th dose independent rect. 11 3
434 234.37 wind 5 90 < th dose independent rect. 9 18
436 234.38 humidity 60 90 > th dose dependent rect. 17 10
439 234.39 radiation 40 4320 < th dose independent rect. 18 17
453 234.43 radiation 40 4320 < th dose independent rect. 22 13
458 234.44 radiation 30 4320 > th dose dependent rect. 14 21
465 234.47 wind 1 30 > th dose dependent rect. 12 10
466 234.48 radiation 40 4320 < th dose independent rect. 7 4
468 234.50 temperature 30 4320 < th dose independent rect. 18 20
470 234.51 humidity 70 14400 < th dose independent sin 18 NA
491 234.54 atmosphere 1005 270 < th dose independent rect. 16 14
528 234.66 humidity 70 14400 > th dose independent rect. 11 21
542 234.68 humidity 70 14400 > th dose independent rect. 10 18
550 234.69 humidity 70 14400 > th dose independent rect. 10 13
555 234.69 temperature 30 4320 < th dose independent rect. 20 18
574 234.71 radiation 40 4320 > th dose independent rect. 14 21
582 234.73 temperature 30 4320 < th dose independent rect. 22 16
583 234.73 humidity 70 14400 < th dose independent rect. 18 23
590 234.75 radiation 30 4320 < th dose independent rect. 9 1
596 234.76 temperature 30 4320 < th dose independent rect. 24 14
598 234.77 radiation 40 4320 < th dose independent sin 11 NA
613 234.82 temperature 30 4320 < th dose independent rect. 5 9
615 234.82 temperature 30 4320 < th dose independent rect. 2 12
618 234.83 temperature 30 4320 < th dose independent rect. 7 7
621 234.83 humidity 70 14400 < th dose independent rect. 20 23
642 234.86 humidity 70 14400 > th dose independent sin 18 NA
667 234.90 radiation 30 4320 > th dose dependent rect. 7 4
689 234.92 humidity 70 14400 < th dose independent no NA NA
823 235.01 humidity 70 14400 < th dose independent rect. 14 23
864 235.08 atmosphere 1005 270 > th dose independent sin 15 NA
885 235.09 humidity 70 14400 > th dose independent rect. 20 23
895 235.11 temperature 30 720 < th dose independent rect. 9 22
900 235.12 radiation 40 4320 > th dose independent rect. 7 4
928 235.13 humidity 70 14400 > th dose independent no NA NA
932 235.13 humidity 70 14400 > th dose independent rect. 15 11
950 235.13 humidity 70 14400 > th dose independent rect. 1 23
951 235.13 humidity 70 14400 > th dose independent rect. 3 23
954 235.13 humidity 70 14400 > th dose independent rect. 23 23
956 235.13 atmosphere 1010 270 < th dose dependent sin 14 NA
958 235.14 humidity 70 14400 > th dose independent rect. 15 9
971 235.14 temperature 30 4320 > th dose independent rect. 18 20
988 235.14 humidity 70 14400 > th dose independent rect. 18 23
991 235.15 humidity 70 14400 > th dose independent rect. 15 7
997 235.15 humidity 70 14400 > th dose independent rect. 1 18