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Os03g0116600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.12 (0.0431) R2 : 0.681
β1 : 1.74 (0.158) R2dD : 0.0885 R2D : 0.067
β2 : 2.28 (0.118) R2dC : 0.297 R2C : -0.0175
β3 : 2.44 (0.0898) R2dE : 0.59 R2E : 0.293
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.577 (0.0921) R2dN8 : 0.0369 R2N8 : -0.00397
σ : 0.806
deviance : 299.38
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C
peak time of C : 16.5
E
wheather : radiation
threshold : 12.24
memory length : 13
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
297.31 0.81 6.13 1.73 2.28 2.44 0.338 -0.486 0.572 16.5 12.62 14 -- --
298.47 0.805 6.12 1.74 2.27 2.44 0.582 -- 0.574 16.5 12.26 13 -- --
297.57 0.803 6.13 1.73 2.29 2.46 -- -0.567 0.574 16.5 12.63 13 -- --
299.38 0.806 6.12 1.74 2.28 2.44 -- -- 0.577 16.5 12.24 13 -- --
518.41 1.07 6.12 1.66 -- 1.82 -- -0.271 0.473 -- 8.131 9 -- --
392.62 0.929 6.2 1.74 2.86 -- 0.334 -- 0.469 20.7 -- -- -- --
392.99 0.928 6.2 1.73 2.86 -- -- -- 0.468 20.7 -- -- -- --
518.23 1.06 6.11 1.67 -- 1.82 -- -- 0.478 -- 7.644 6 -- --
376.93 0.904 6.17 -- 2.21 2.46 -- -- 0.369 16.4 10.42 10 -- --
853.63 1.37 6.12 1.72 -- -- -- -- 0.444 -- -- -- -- --
471.82 1.02 6.24 -- 2.85 -- -- -- 0.276 20.7 -- -- -- --
592.05 1.13 6.16 -- -- 1.86 -- -- 0.285 -- 8.012 3 -- --
931.87 1.42 6.17 -- -- -- -- -- 0.253 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 298.07 radiation 10 10 < th dose dependent rect. 8 23
4 300.17 radiation 10 10 < th dose dependent rect. 15 23
5 300.40 radiation 10 10 < th dose dependent rect. 13 23
6 300.47 radiation 10 10 < th dose dependent no NA NA
14 304.42 radiation 10 10 < th dose dependent rect. 23 23
17 305.20 radiation 10 10 < th dose dependent rect. 1 19
18 306.23 radiation 10 30 < th dose dependent sin 0 NA
22 307.83 radiation 10 10 < th dose dependent rect. 17 23
24 308.00 radiation 10 10 < th dose dependent rect. 12 19
68 311.65 radiation 1 10 < th dose independent sin 0 NA
76 312.19 radiation 10 10 < th dose dependent rect. 21 23
79 312.37 radiation 10 10 < th dose dependent rect. 1 23
81 312.51 radiation 20 30 < th dose dependent rect. 8 12
101 315.02 radiation 30 90 < th dose dependent rect. 13 16
110 315.73 radiation 1 10 < th dose independent rect. 1 19
130 317.15 radiation 1 10 > th dose independent sin 0 NA
142 318.12 radiation 20 90 < th dose independent rect. 13 16
159 318.80 radiation 10 30 < th dose independent rect. 9 11
168 319.60 radiation 10 30 < th dose independent rect. 8 21
247 322.78 radiation 40 270 < th dose independent rect. 13 14
276 323.51 radiation 30 90 < th dose dependent rect. 15 14
311 324.48 radiation 20 90 < th dose independent rect. 15 14
338 325.46 radiation 1 30 > th dose independent rect. 5 12
423 327.27 radiation 1 720 > th dose independent rect. 10 6
448 327.94 radiation 10 30 < th dose independent rect. 12 8
737 332.63 radiation 40 720 < th dose dependent rect. 15 4
766 333.16 radiation 30 720 < th dose independent rect. 15 4
842 334.45 temperature 10 270 > th dose dependent rect. 24 10
849 334.60 radiation 30 270 < th dose independent rect. 13 5
856 334.77 radiation 10 10 < th dose dependent rect. 3 23
863 334.87 radiation 10 90 > th dose independent rect. 9 23
888 335.32 radiation 10 10 > th dose independent rect. 9 23