Os03g0115500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0115500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.37 | 0.383 | 10.2 | -1.73 | 0.698 | 1.02 | 0.378 | -1.31 | -0.463 | 6.48 | 86.86 | 1023 | -- | -- |
| 68.46 | 0.385 | 10.2 | -1.64 | 0.701 | 0.939 | 0.544 | -- | -0.446 | 6.51 | 86.49 | 1013 | -- | -- |
| 66.7 | 0.38 | 10.2 | -1.72 | 0.696 | 1.01 | -- | -1.36 | -0.461 | 6.39 | 87 | 1023 | -- | -- |
| 69.1 | 0.387 | 10.2 | -1.63 | 0.694 | 0.89 | -- | -- | -0.449 | 6.23 | 86 | 1029 | -- | -- |
| 85.53 | 0.431 | 10.2 | -1.71 | -- | 0.983 | -- | -1.16 | -0.451 | -- | 87.63 | 1227 | -- | -- |
| 82.7 | 0.426 | 10.2 | -1.53 | 0.659 | -- | -0.0613 | -- | -0.455 | 4.7 | -- | -- | -- | -- |
| 82.71 | 0.426 | 10.2 | -1.53 | 0.659 | -- | -- | -- | -0.455 | 4.73 | -- | -- | -- | -- |
| 87.52 | 0.436 | 10.2 | -1.61 | -- | 0.889 | -- | -- | -0.439 | -- | 87 | 1237 | -- | -- |
| 135.94 | 0.543 | 10.2 | -- | 0.762 | 0.765 | -- | -- | -0.298 | 6.24 | 106.4 | 889 | -- | -- |
| 105.73 | 0.48 | 10.2 | -1.5 | -- | -- | -- | -- | -0.438 | -- | -- | -- | -- | -- |
| 144.28 | 0.562 | 10.2 | -- | 0.631 | -- | -- | -- | -0.285 | 4.79 | -- | -- | -- | -- |
| 153.06 | 0.576 | 10.2 | -- | -- | 0.772 | -- | -- | -0.298 | -- | 94 | 1245 | -- | -- |
| 165.35 | 0.6 | 10.2 | -- | -- | -- | -- | -- | -0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.88 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 7 | 65.80 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 13 | 66.40 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 17 | 66.62 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 15 |
| 31 | 67.00 | humidity | 90 | 720 | < th | dose dependent | sin | 16 | NA |
| 71 | 67.56 | humidity | 50 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 101 | 67.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 108 | 67.96 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 109 | 67.96 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 126 | 68.07 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 140 | 68.19 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 16 |
| 161 | 68.29 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 185 | 68.37 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 197 | 68.40 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 230 | 68.48 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 237 | 68.51 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 269 | 68.64 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 8 |
| 275 | 68.66 | humidity | 60 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 282 | 68.69 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 294 | 68.74 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 20 |
| 308 | 68.81 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 322 | 68.85 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 329 | 68.86 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 337 | 68.90 | humidity | 90 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 341 | 68.92 | humidity | 90 | 720 | < th | dose dependent | no | NA | NA |
| 342 | 68.92 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 345 | 68.92 | humidity | 90 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 361 | 68.96 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 387 | 69.01 | humidity | 50 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 388 | 69.01 | humidity | 90 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 397 | 69.03 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 402 | 69.04 | humidity | 50 | 720 | > th | dose dependent | sin | 15 | NA |
| 470 | 69.18 | humidity | 50 | 720 | > th | dose dependent | no | NA | NA |
| 510 | 69.27 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 522 | 69.28 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 530 | 69.30 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 19 |
| 552 | 69.34 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 561 | 69.35 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 619 | 69.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 640 | 69.48 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 21 |
| 650 | 69.49 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 666 | 69.53 | humidity | 50 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 695 | 69.60 | humidity | 80 | 720 | < th | dose independent | sin | 20 | NA |
| 711 | 69.63 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 10 |
| 712 | 69.63 | humidity | 50 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 724 | 69.66 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 7 |
| 758 | 69.71 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 778 | 69.74 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 996 | 69.99 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 14 |