FiT-DB / Search/ Help/ Sample detail

Os03g0115300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.18 (0.0274) R2 : 0.55
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.32 (0.071) R2dC : 0.346 R2C : 0.282
β3 : 1.24 (0.0823) R2dE : 0.228 R2E : 0.13
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.401 (0.0577) R2dN8 : 0.0591 R2N8 : 0.0297
σ : 0.513
deviance : 121.29
__
_____
C
peak time of C : 19.3
E
wheather : temperature
threshold : 15.67
memory length : 11
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22.9
open length of G : 6.12

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
107.66 0.488 7.19 -0.659 1.33 1.32 -1.22 -0.744 -0.462 19.3 15.49 9 23 6.1
108.3 0.485 7.2 -0.625 1.33 1.31 -1.32 -- -0.475 19.3 15.96 8 23 6.1
111.55 0.492 7.19 -0.623 1.33 1.29 -- -0.664 -0.464 19.4 16.08 10 22.9 6.12
112.2 0.493 7.19 -0.592 1.31 1.29 -- -- -0.463 19.4 16.36 10 22.9 6.11
195.06 0.654 7.15 -0.593 -- 1.23 -- -0.506 -0.428 -- 15.6 24 21.7 6.45
141.65 0.558 7.18 -0.523 1.37 -- -0.883 -- -0.383 21.4 -- -- -- --
144.47 0.563 7.18 -0.492 1.37 -- -- -- -0.382 21.4 -- -- -- --
179.11 0.623 7.22 -0.514 -- 1.5 -- -- -0.626 -- 15.29 169 18.4 8.82
121.29 0.513 7.18 -- 1.32 1.24 -- -- -0.401 19.3 15.67 11 22.9 6.12
254.49 0.745 7.14 -0.483 -- -- -- -- -0.387 -- -- -- -- --
150.83 0.575 7.16 -- 1.37 -- -- -- -0.327 21.4 -- -- -- --
162.92 0.594 7.06 -- -- 1.29 -- -- -0.29 -- 0.5359 204 14.8 11.9
260.64 0.754 7.13 -- -- -- -- -- -0.333 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.70 temperature 15.0 10 > th dose dependent rect. 23 6
30 113.92 wind 5.0 270 < th dose independent rect. 10 17
35 114.15 temperature 20.0 30 > th dose independent rect. 23 6
47 115.42 wind 9.0 270 < th dose dependent rect. 10 17
49 115.49 atmosphere 995.0 30 > th dose dependent rect. 5 17
52 115.58 temperature 15.0 90 > th dose independent rect. 5 18
63 115.94 atmosphere 1000.0 30 > th dose independent rect. 5 17
68 116.11 wind 9.0 270 < th dose independent rect. 6 23
75 116.33 wind 9.0 30 < th dose dependent rect. 22 7
76 116.34 wind 5.0 270 < th dose independent rect. 21 6
77 116.38 temperature 15.0 270 > th dose independent rect. 3 18
85 116.63 humidity 80.0 90 > th dose independent rect. 22 7
88 116.72 humidity 50.0 30 > th dose dependent rect. 22 7
100 117.08 temperature 30.0 30 < th dose independent rect. 5 5
106 117.22 atmosphere 1015.0 30 < th dose independent rect. 22 7
108 117.26 wind 5.0 270 < th dose independent rect. 8 20
110 117.28 wind 9.0 270 < th dose dependent rect. 21 6
119 117.40 wind 9.0 270 < th dose dependent rect. 7 21
121 117.44 precipitation 0.1 30 < th dose independent rect. 5 17
122 117.44 precipitation 0.1 30 < th dose dependent rect. 5 17
138 117.70 wind 9.0 30 < th dose dependent rect. 13 16
141 117.76 radiation 1.0 90 < th dose dependent sin 10 NA
148 117.81 radiation 1.0 30 < th dose dependent sin 8 NA
151 117.84 wind 9.0 30 < th dose dependent rect. 11 18
161 117.97 temperature 10.0 30 > th dose independent rect. 22 7
162 117.97 temperature 30.0 30 < th dose independent rect. 22 7
163 117.97 humidity 50.0 30 > th dose independent rect. 22 7
166 117.97 atmosphere 995.0 30 > th dose independent rect. 22 7
167 117.97 radiation 1.0 30 < th dose independent rect. 22 7
174 117.97 atmosphere 1015.0 30 < th dose independent rect. 5 17
175 117.97 radiation 20.0 30 < th dose dependent rect. 22 7
181 118.01 radiation 40.0 30 < th dose independent rect. 5 5
239 118.36 temperature 10.0 270 > th dose dependent rect. 22 15
244 118.39 wind 9.0 270 < th dose independent rect. 7 9
260 118.48 temperature 20.0 270 > th dose independent rect. 23 2
290 118.58 atmosphere 995.0 270 > th dose independent rect. 16 15
292 118.58 wind 9.0 270 < th dose independent rect. 7 21
296 118.59 precipitation 0.1 30 < th dose independent rect. 22 7
297 118.59 precipitation 0.1 30 < th dose dependent rect. 22 7
337 118.73 precipitation 0.1 270 < th dose independent rect. 5 1
339 118.73 precipitation 0.1 270 < th dose dependent rect. 5 1
359 118.75 wind 7.0 270 < th dose independent rect. 5 1
361 118.75 temperature 10.0 270 > th dose independent rect. 5 1
363 118.75 temperature 30.0 270 < th dose independent rect. 5 1
364 118.75 humidity 50.0 270 > th dose independent rect. 5 1
367 118.75 atmosphere 995.0 270 > th dose independent rect. 5 1
368 118.75 atmosphere 1015.0 270 < th dose independent rect. 5 1
369 118.75 radiation 20.0 270 < th dose independent rect. 5 1
374 118.75 temperature 10.0 270 > th dose independent rect. 6 23
380 118.78 wind 9.0 30 < th dose independent rect. 5 17
388 118.83 humidity 70.0 30 > th dose independent rect. 5 5
405 119.02 wind 9.0 30 < th dose independent rect. 10 19
407 119.03 radiation 40.0 270 < th dose dependent rect. 5 1
435 119.08 precipitation 0.1 270 < th dose independent rect. 3 18
437 119.08 precipitation 0.1 270 < th dose dependent rect. 3 18
442 119.16 atmosphere 995.0 270 > th dose independent rect. 3 18
444 119.16 humidity 50.0 30 > th dose dependent rect. 5 6
446 119.19 radiation 30.0 270 < th dose independent rect. 16 15
453 119.22 radiation 40.0 90 < th dose dependent rect. 5 5
475 119.27 wind 9.0 10 < th dose independent rect. 5 5
476 119.27 temperature 10.0 10 > th dose independent rect. 5 5
478 119.27 humidity 50.0 10 > th dose independent rect. 5 5
479 119.27 atmosphere 995.0 10 > th dose independent rect. 5 5
480 119.27 atmosphere 1015.0 10 < th dose independent rect. 5 5
483 119.27 temperature 10.0 10 > th dose independent rect. 10 19
490 119.30 temperature 10.0 270 > th dose independent rect. 7 9
491 119.30 atmosphere 1015.0 270 < th dose independent rect. 7 9
492 119.30 temperature 10.0 270 > th dose independent rect. 16 15
499 119.33 precipitation 0.1 10 < th dose independent rect. 5 5
500 119.33 precipitation 0.1 10 < th dose dependent rect. 5 5
503 119.35 temperature 10.0 270 > th dose dependent rect. 5 1
504 119.36 radiation 1.0 30 < th dose independent sin 8 NA
506 119.36 atmosphere 1015.0 10 < th dose independent rect. 10 19
510 119.39 wind 9.0 270 < th dose dependent rect. 5 1
512 119.41 radiation 1.0 30 < th dose dependent rect. 22 19
542 119.51 precipitation 0.1 270 < th dose independent rect. 16 15
544 119.51 precipitation 0.1 270 < th dose dependent rect. 16 15
555 119.58 humidity 50.0 270 > th dose dependent rect. 5 1
557 119.59 precipitation 0.1 270 < th dose independent rect. 7 9
558 119.59 precipitation 0.1 270 < th dose dependent rect. 7 9
563 119.63 radiation 1.0 10 > th dose independent sin 8 NA
570 119.66 temperature 10.0 10 > th dose dependent rect. 10 19
595 119.80 radiation 1.0 90 > th dose independent sin 10 NA
601 119.82 radiation 40.0 270 < th dose dependent rect. 3 6
602 119.82 humidity 70.0 30 > th dose dependent rect. 11 18
631 119.97 temperature 30.0 270 < th dose independent rect. 3 6
633 119.98 wind 5.0 30 < th dose independent rect. 13 16
637 120.00 wind 9.0 30 < th dose dependent rect. 5 5
646 120.04 humidity 50.0 10 > th dose independent rect. 10 19
651 120.07 precipitation 0.1 10 < th dose independent rect. 10 19
655 120.07 precipitation 0.1 10 < th dose dependent rect. 10 19
688 120.22 humidity 50.0 30 > th dose dependent rect. 10 19
693 120.24 atmosphere 1015.0 270 < th dose independent rect. 3 18
694 120.25 precipitation 0.1 270 < th dose independent rect. 4 3
697 120.25 precipitation 0.1 270 < th dose dependent rect. 4 3
707 120.27 wind 9.0 270 < th dose independent rect. 4 3
708 120.27 temperature 10.0 270 > th dose independent rect. 4 3
711 120.27 humidity 50.0 270 > th dose independent rect. 4 3
713 120.27 atmosphere 995.0 270 > th dose independent rect. 4 3
714 120.27 atmosphere 1015.0 270 < th dose independent rect. 4 3
715 120.27 radiation 30.0 270 < th dose independent rect. 4 3
717 120.27 temperature 10.0 270 > th dose independent rect. 7 21
731 120.31 radiation 20.0 270 < th dose independent rect. 3 6
773 120.46 precipitation 0.1 270 < th dose independent rect. 3 5
774 120.46 radiation 1.0 30 < th dose independent rect. 22 19
775 120.46 precipitation 0.1 270 < th dose dependent rect. 3 5
795 120.52 wind 9.0 270 < th dose independent rect. 3 6
797 120.52 temperature 10.0 270 > th dose independent rect. 3 6
801 120.52 humidity 50.0 270 > th dose independent rect. 3 6
803 120.52 atmosphere 995.0 270 > th dose independent rect. 3 6
805 120.52 atmosphere 1015.0 270 < th dose independent rect. 3 6
809 120.52 temperature 10.0 270 > th dose independent rect. 9 18
811 120.52 radiation 40.0 270 < th dose dependent rect. 4 3
818 120.55 atmosphere 995.0 270 > th dose independent rect. 7 9
828 120.58 atmosphere 995.0 10 > th dose independent rect. 10 19
853 120.60 wind 1.0 90 > th dose independent rect. 23 6
859 120.62 atmosphere 1015.0 10 < th dose dependent rect. 10 19
865 120.64 temperature 30.0 30 < th dose independent rect. 5 17
877 120.66 wind 9.0 270 < th dose independent rect. 16 15
909 120.77 atmosphere 995.0 270 > th dose dependent rect. 5 1
955 120.87 atmosphere 995.0 10 > th dose dependent rect. 5 5
977 120.93 precipitation 0.1 270 < th dose independent rect. 8 19
979 120.93 precipitation 0.1 270 < th dose dependent rect. 8 19