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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0115000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.78 (0.0729) R2 : 0.154
β1 : -1.37 (0.264) R2dD : 0.0518 R2D : 0.0114
β2 : 1.52 (0.212) R2dC : 0.143 R2C : -0.00248
β3 : -1.28 (0.236) R2dE : 0.0859 R2E : -0.083
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.804 (0.161) R2dN8 : 0.0685 R2N8 : -0.00319
σ : 1.35
deviance : 836.51
__
_____
C
peak time of C : 1.88
E
wheather : temperature
threshold : 25.4
memory length : 297
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.9
open length of G : 1.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
829.1 1.35 3.79 -1.6 1.51 -1.28 -2 1.94 -0.848 1.84 25.49 271 22 1.83
836.01 1.35 3.79 -1.51 1.51 -1.23 -0.548 -- -0.827 1.83 25.4 303 21.9 1.77
837.01 1.35 3.78 -1.49 1.47 -1.26 -- 0.579 -0.799 1.72 25.5 273 22 1.84
836.51 1.35 3.78 -1.37 1.52 -1.28 -- -- -0.804 1.88 25.4 297 21.9 1.7
879.62 1.38 3.78 -1.79 -- -0.843 -- 1.03 -0.801 -- 24.97 1220 22 1.95
887.63 1.4 3.71 -1.29 0.907 -- -0.55 -- -0.543 2.71 -- -- -- --
888.69 1.4 3.7 -1.28 0.906 -- -- -- -0.539 2.72 -- -- -- --
884.37 1.39 3.76 -1.54 -- -0.785 -- -- -0.783 -- 24.94 1215 22.1 1.75
886.3 1.39 3.75 -- 1.51 -1.21 -- -- -0.693 1.75 25.42 298 21.9 1.73
936.41 1.43 3.7 -1.24 -- -- -- -- -0.516 -- -- -- -- --
931.96 1.43 3.67 -- 0.881 -- -- -- -0.397 2.71 -- -- -- --
942.24 1.43 3.71 -- -- -0.631 -- -- -0.533 -- 24.99 1202 22.2 1.81
977.16 1.46 3.67 -- -- -- -- -- -0.378 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 830.05 temperature 30.0 270 < th dose dependent rect. 22 1
2 831.42 atmosphere 1010.0 270 < th dose dependent rect. 15 4
4 831.75 atmosphere 1010.0 270 < th dose dependent rect. 14 6
5 831.77 temperature 25.0 270 < th dose independent rect. 22 2
7 832.00 temperature 30.0 90 < th dose dependent rect. 22 4
10 832.68 humidity 70.0 720 < th dose independent rect. 18 2
33 833.36 atmosphere 1005.0 270 < th dose independent rect. 16 3
39 833.78 humidity 70.0 720 > th dose independent rect. 17 8
40 834.13 humidity 90.0 90 > th dose dependent rect. 3 2
41 834.14 wind 5.0 270 < th dose independent rect. 22 1
43 834.65 wind 7.0 270 < th dose dependent rect. 22 1
52 835.50 humidity 90.0 90 > th dose independent rect. 3 2
56 835.63 humidity 70.0 720 < th dose dependent rect. 18 1
59 835.85 humidity 70.0 720 < th dose dependent rect. 17 3
74 836.03 wind 7.0 90 < th dose dependent rect. 22 4
86 836.11 temperature 25.0 10 < th dose independent rect. 23 3
93 836.51 humidity 70.0 270 > th dose dependent rect. 22 1
102 837.04 temperature 30.0 720 > th dose dependent rect. 18 1
123 837.43 wind 5.0 90 < th dose independent rect. 22 4
136 838.36 atmosphere 1005.0 90 < th dose independent rect. 17 5
145 838.63 atmosphere 1010.0 10 < th dose dependent rect. 16 7
157 839.14 humidity 70.0 90 > th dose dependent rect. 22 4
186 839.94 atmosphere 1010.0 90 < th dose dependent rect. 17 5
194 840.20 temperature 20.0 270 > th dose dependent rect. 14 18
213 840.77 temperature 30.0 720 > th dose independent rect. 17 2
236 840.99 temperature 20.0 270 > th dose dependent rect. 14 15
260 841.40 temperature 25.0 720 > th dose dependent rect. 16 16
303 842.03 humidity 50.0 1440 < th dose dependent rect. 16 1
325 842.42 radiation 1.0 720 > th dose dependent rect. 18 1
369 842.75 temperature 25.0 270 < th dose independent rect. 20 5
418 843.24 temperature 25.0 720 > th dose dependent sin 13 NA
453 843.50 radiation 30.0 1440 > th dose independent rect. 16 16
485 843.95 temperature 25.0 10 < th dose independent rect. 3 6
503 844.03 temperature 30.0 720 < th dose independent rect. 17 8
506 844.12 humidity 90.0 90 > th dose independent rect. 2 7
525 844.56 temperature 25.0 270 < th dose independent rect. 8 17
549 845.07 wind 9.0 1440 < th dose independent rect. 23 4
587 845.65 humidity 50.0 1440 > th dose independent rect. 16 1
591 845.74 atmosphere 1015.0 270 < th dose independent rect. 24 22
599 845.88 temperature 30.0 30 < th dose dependent rect. 9 17
604 845.98 temperature 15.0 90 > th dose independent rect. 2 20
680 846.97 temperature 20.0 30 > th dose independent rect. 16 17
703 847.33 humidity 50.0 1440 > th dose independent rect. 16 5
706 847.35 humidity 50.0 1440 > th dose independent rect. 16 17
713 847.40 precipitation 0.1 90 < th dose independent rect. 2 20
714 847.40 precipitation 0.1 90 < th dose dependent rect. 2 20
715 847.41 humidity 80.0 270 > th dose independent rect. 22 1
727 847.49 temperature 30.0 90 < th dose dependent rect. 11 15
787 847.84 humidity 50.0 1440 > th dose independent rect. 16 13
798 847.94 radiation 1.0 720 > th dose independent rect. 18 11
800 847.95 humidity 70.0 720 > th dose independent rect. 18 14
803 847.96 atmosphere 995.0 90 > th dose independent rect. 2 20
810 848.02 radiation 1.0 720 > th dose independent rect. 18 1
847 848.12 wind 1.0 10 < th dose independent rect. 4 2
868 848.29 temperature 10.0 90 > th dose independent rect. 22 4
870 848.29 humidity 50.0 90 > th dose independent rect. 22 4
873 848.29 atmosphere 995.0 90 > th dose independent rect. 22 4
874 848.29 radiation 1.0 90 < th dose independent rect. 22 4
880 848.29 atmosphere 1015.0 90 < th dose independent rect. 2 20
882 848.29 radiation 1.0 90 < th dose dependent rect. 22 4
894 848.38 precipitation 0.1 90 < th dose independent rect. 22 4
896 848.38 precipitation 0.1 90 < th dose dependent rect. 22 4
897 848.39 temperature 25.0 1440 > th dose dependent rect. 15 1
937 848.63 humidity 70.0 720 < th dose independent sin 12 NA
944 848.66 precipitation 0.1 270 < th dose independent rect. 24 22
947 848.66 precipitation 0.1 270 < th dose dependent rect. 24 22
989 848.81 temperature 10.0 270 > th dose dependent rect. 24 22