Os03g0114700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os03g0114700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.09 | 0.576 | 5.96 | -3.3 | 1.55 | -2.33 | -0.326 | -1.04 | -0.359 | 23.9 | 24.81 | 317 | -- | -- |
| 151.32 | 0.573 | 5.99 | -3.43 | 1.52 | -2.23 | -0.405 | -- | -0.403 | 23.9 | 25.17 | 341 | -- | -- |
| 150.52 | 0.571 | 5.96 | -3.27 | 1.54 | -2.33 | -- | -1.1 | -0.355 | 23.9 | 24.81 | 326 | -- | -- |
| 151.92 | 0.574 | 5.98 | -3.44 | 1.52 | -2.22 | -- | -- | -0.406 | 23.9 | 25.1 | 341 | -- | -- |
| 229.3 | 0.705 | 5.98 | -3.6 | -- | -2.82 | -- | -0.287 | -0.548 | -- | 27.04 | 810 | -- | -- |
| 222.5 | 0.699 | 5.89 | -2.9 | 1.48 | -- | -0.464 | -- | 0.0422 | 23.2 | -- | -- | -- | -- |
| 223.42 | 0.7 | 5.89 | -2.88 | 1.48 | -- | -- | -- | 0.0437 | 23.2 | -- | -- | -- | -- |
| 229.38 | 0.705 | 5.99 | -3.65 | -- | -2.8 | -- | -- | -0.563 | -- | 27.14 | 803 | -- | -- |
| 432.53 | 0.969 | 5.85 | -- | 1.52 | -0.753 | -- | -- | 0.226 | 23.4 | 25.1 | 165 | -- | -- |
| 360.47 | 0.887 | 5.85 | -2.84 | -- | -- | -- | -- | 0.0567 | -- | -- | -- | -- | -- |
| 441.53 | 0.983 | 5.81 | -- | 1.45 | -- | -- | -- | 0.364 | 23.1 | -- | -- | -- | -- |
| 539.68 | 1.08 | 5.83 | -- | -- | -1.33 | -- | -- | 0.121 | -- | 27.18 | 760 | -- | -- |
| 573.37 | 1.12 | 5.78 | -- | -- | -- | -- | -- | 0.372 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.46 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 5 | 149.95 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 9 | 150.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 20 |
| 11 | 150.66 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 12 | 150.70 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 24 | 151.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 17 |
| 30 | 151.49 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 32 | 151.59 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 34 | 151.64 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 62 | 152.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 21 |
| 67 | 152.64 | temperature | 25 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 92 | 153.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 106 | 153.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 153 | 154.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 167 | 155.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 205 | 155.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 224 | 156.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 338 | 157.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 355 | 157.65 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 362 | 157.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 363 | 157.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 385 | 157.84 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 401 | 157.97 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 444 | 158.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 8 |
| 575 | 158.67 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 636 | 158.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 8 |
| 719 | 159.38 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 743 | 159.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 14 |
| 779 | 159.73 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 782 | 159.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 16 |
| 823 | 159.92 | temperature | 15 | 720 | > th | dose dependent | sin | 12 | NA |
| 847 | 160.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 9 |
| 882 | 160.14 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 889 | 160.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 902 | 160.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 9 |
| 943 | 160.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 991 | 160.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 16 |