Os03g0114400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 rapidly elicited protein 102 (Fragment).
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Os03g0114400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 rapidly elicited protein 102 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.3 | 0.475 | 10.8 | -0.0674 | 0.578 | 0.852 | -0.589 | -1.04 | -0.023 | 5.55 | 21.22 | 846 | -- | -- |
| 105.33 | 0.478 | 10.8 | 0.169 | 0.556 | 0.938 | -0.472 | -- | 0.026 | 5.43 | 21.3 | 960 | -- | -- |
| 102.76 | 0.472 | 10.8 | -0.0951 | 0.546 | 0.859 | -- | -1.08 | -0.0336 | 5.46 | 21.3 | 970 | -- | -- |
| 105.82 | 0.479 | 10.8 | 0.169 | 0.554 | 0.939 | -- | -- | 0.0301 | 5.47 | 21.27 | 949 | -- | -- |
| 116.04 | 0.502 | 10.9 | -0.154 | -- | 0.746 | -- | -1.59 | -0.104 | -- | 22.3 | 1161 | -- | -- |
| 132.65 | 0.54 | 10.7 | 0.526 | 0.564 | -- | -0.635 | -- | 0.279 | 4.43 | -- | -- | -- | -- |
| 133.74 | 0.542 | 10.7 | 0.531 | 0.56 | -- | -- | -- | 0.283 | 4.46 | -- | -- | -- | -- |
| 120.84 | 0.512 | 10.8 | 0.168 | -- | 0.973 | -- | -- | 0.0506 | -- | 21.2 | 1106 | -- | -- |
| 106.46 | 0.481 | 10.8 | -- | 0.553 | 0.989 | -- | -- | -0.0015 | 5.5 | 21.22 | 960 | -- | -- |
| 150.53 | 0.573 | 10.7 | 0.553 | -- | -- | -- | -- | 0.297 | -- | -- | -- | -- | -- |
| 141.17 | 0.556 | 10.8 | -- | 0.57 | -- | -- | -- | 0.223 | 4.44 | -- | -- | -- | -- |
| 121.21 | 0.513 | 10.8 | -- | -- | 1.01 | -- | -- | -0.0515 | -- | 21.2 | 2571 | -- | -- |
| 158.59 | 0.588 | 10.8 | -- | -- | -- | -- | -- | 0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 3 | 99.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 6 | 99.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 7 | 99.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 13 | 100.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 26 | 100.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 39 | 100.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 40 | 100.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 50 | 100.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 68 | 100.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 12 |
| 92 | 100.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 97 | 100.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 12 |
| 125 | 100.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 183 | 100.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 235 | 100.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 297 | 101.09 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 332 | 101.21 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 17 |
| 347 | 101.28 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 435 | 101.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 441 | 101.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 3 |
| 595 | 101.98 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 598 | 101.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 732 | 102.32 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 849 | 102.61 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 907 | 102.73 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 988 | 102.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 3 |