Os03g0114200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : S1, IF1 type family protein.
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Os03g0114200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : S1, IF1 type family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.92 | 0.342 | 10.8 | -0.0771 | 0.197 | 0.561 | -0.876 | 1.89 | -0.132 | 0.0398 | 25.7 | 72 | -- | -- |
| 57.33 | 0.355 | 10.7 | 0.239 | 0.19 | 0.448 | -0.347 | -- | -0.0604 | 23.2 | 27.4 | 31 | -- | -- |
| 54.53 | 0.344 | 10.8 | -0.0472 | 0.305 | 0.527 | -- | 1.81 | -0.142 | 23.8 | 24.4 | 402 | -- | -- |
| 57.71 | 0.354 | 10.7 | 0.256 | 0.205 | 0.456 | -- | -- | -0.0589 | 23.2 | 27.1 | 56 | -- | -- |
| 57.58 | 0.355 | 10.7 | 0.0985 | -- | 0.633 | -- | 1.15 | -0.0717 | -- | 26.61 | 8 | -- | -- |
| 60.27 | 0.364 | 10.7 | 0.135 | 0.305 | -- | -0.31 | -- | -0.158 | 0.279 | -- | -- | -- | -- |
| 60.69 | 0.365 | 10.7 | 0.147 | 0.306 | -- | -- | -- | -0.157 | 0.369 | -- | -- | -- | -- |
| 59.72 | 0.362 | 10.7 | 0.289 | -- | 0.584 | -- | -- | -0.0305 | -- | 27.7 | 10 | -- | -- |
| 59.34 | 0.359 | 10.7 | -- | 0.243 | 0.351 | -- | -- | -0.108 | 23.4 | 27.2 | 123 | -- | -- |
| 66.58 | 0.381 | 10.7 | 0.157 | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
| 61.25 | 0.366 | 10.8 | -- | 0.308 | -- | -- | -- | -0.173 | 0.394 | -- | -- | -- | -- |
| 61.78 | 0.367 | 10.7 | -- | -- | 0.505 | -- | -- | -0.0767 | -- | 27.64 | 10 | -- | -- |
| 67.23 | 0.383 | 10.7 | -- | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.31 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 15 |
| 2 | 51.37 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 3 | 51.37 | temperature | 25 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 5 | 51.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 39 | 51.80 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 40 | 51.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 41 | 51.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 46 | 51.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 118 | 52.27 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 158 | 52.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 169 | 52.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 184 | 52.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 9 |
| 284 | 52.79 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 297 | 52.82 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 337 | 52.96 | wind | 3 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 347 | 53.00 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 353 | 53.01 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 356 | 53.01 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 365 | 53.03 | wind | 7 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 385 | 53.07 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 399 | 53.09 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 404 | 53.10 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 426 | 53.14 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 443 | 53.15 | temperature | 10 | 90 | > th | dose dependent | rect. | 21 | 22 |
| 451 | 53.17 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 458 | 53.17 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 460 | 53.17 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 462 | 53.17 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 473 | 53.19 | wind | 7 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 507 | 53.23 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 519 | 53.25 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 568 | 53.30 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 609 | 53.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 623 | 53.36 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 650 | 53.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 16 |
| 668 | 53.39 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 678 | 53.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 14 |