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Os03g0114100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.68 (0.06) R2 : 0.52
β1 : -1.5 (0.22) R2dD : 0.0512 R2D : 0.0093
β2 : 2.9 (0.162) R2dC : 0.369 R2C : 0.163
β3 : 3.5 (0.254) R2dE : 0.22 R2E : 0.0268
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.56 (0.956) R2dD*E : 0.0147 R2D*E : 0.000296
γ1 : -1.09 (0.128) R2dN8 : 0.102 R2N8 : 0.036
σ : 1.12
deviance : 580.83
__
_____
C
peak time of C : 4.74
E
wheather : temperature
threshold : 30.1
memory length : 89
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
580.73 1.13 7.68 -1.5 2.9 3.5 0.217 3.65 -1.09 4.75 30.1 89 18.1 2.01
597.82 1.14 7.67 -1.51 2.87 3.44 -0.443 -- -1.09 4.74 30.15 84 18.1 1.98
580.83 1.12 7.68 -1.5 2.9 3.5 -- 3.56 -1.09 4.74 30.1 89 18.1 2
597.48 1.14 7.67 -1.54 2.9 3.48 -- -- -1.08 4.74 30.01 81 18.2 1.95
989.03 1.46 7.7 -1.32 -- 2.65 -- 3.88 -0.862 -- 29.4 115 18.1 1.93
811.23 1.34 7.69 -1.54 2.29 -- -0.367 -- -1.02 3.62 -- -- -- --
811.64 1.33 7.68 -1.53 2.29 -- -- -- -1.02 3.62 -- -- -- --
680.43 1.21 7.69 -1.43 -- 2.52 -- -- -0.904 -- 31.53 1040 18 1.93
658.23 1.19 7.63 -- 2.89 3.6 -- -- -0.912 4.79 29.93 78 18.3 1.86
1103.84 1.55 7.69 -1.43 -- -- -- -- -0.955 -- -- -- -- --
873.34 1.38 7.65 -- 2.26 -- -- -- -0.846 3.62 -- -- -- --
735.14 1.26 7.68 -- -- 2.54 -- -- -0.834 -- 31.3 1041 18 1.93
1158.08 1.59 7.65 -- -- -- -- -- -0.796 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 582.04 temperature 30.0 90 < th dose independent rect. 18 2
2 590.72 humidity 50.0 90 > th dose dependent rect. 18 2
3 591.65 humidity 60.0 90 > th dose independent rect. 18 2
4 595.14 radiation 1.0 90 < th dose dependent rect. 18 2
5 596.38 temperature 20.0 90 > th dose independent rect. 18 11
6 598.33 precipitation 0.1 90 < th dose independent rect. 20 23
7 598.33 precipitation 0.1 90 < th dose dependent rect. 20 23
8 599.64 radiation 1.0 90 < th dose independent rect. 18 2
12 604.44 wind 9.0 90 < th dose independent rect. 20 23
13 604.47 temperature 15.0 90 > th dose independent rect. 20 23
14 605.31 temperature 10.0 90 > th dose independent rect. 19 1
19 605.31 atmosphere 995.0 90 > th dose independent rect. 19 1
20 605.31 atmosphere 1010.0 90 < th dose independent rect. 19 1
33 605.39 wind 1.0 90 > th dose independent rect. 19 1
34 605.45 wind 9.0 90 < th dose independent rect. 19 1
51 614.01 wind 9.0 90 < th dose dependent rect. 19 1
54 615.27 humidity 50.0 14400 > th dose independent rect. 19 3
75 615.90 radiation 10.0 14400 < th dose dependent rect. 19 2
86 616.27 temperature 10.0 1440 > th dose independent rect. 19 3
89 616.27 temperature 30.0 1440 < th dose independent rect. 19 3
93 616.27 humidity 50.0 1440 > th dose independent rect. 19 3
95 616.27 atmosphere 995.0 1440 > th dose independent rect. 19 3
96 616.27 radiation 1.0 1440 < th dose independent rect. 19 3
116 616.27 temperature 10.0 1440 > th dose independent rect. 22 21
119 616.27 radiation 20.0 1440 < th dose dependent rect. 19 3
184 618.74 radiation 10.0 720 < th dose independent rect. 16 4
196 620.80 precipitation 0.1 90 < th dose independent rect. 19 1
197 620.80 precipitation 0.1 90 < th dose dependent rect. 19 1
201 621.91 atmosphere 995.0 90 > th dose dependent rect. 19 1
206 623.62 temperature 10.0 90 > th dose dependent rect. 18 11
215 624.79 temperature 10.0 90 > th dose dependent rect. 19 1
254 626.62 temperature 20.0 90 > th dose independent rect. 18 19
420 636.72 atmosphere 1015.0 90 < th dose dependent rect. 19 1
429 637.57 temperature 30.0 10 < th dose dependent rect. 18 3
435 638.56 humidity 60.0 90 > th dose independent rect. 18 11
444 638.85 precipitation 0.1 90 < th dose independent rect. 5 13
445 638.85 precipitation 0.1 90 < th dose dependent rect. 5 13
446 639.09 radiation 30.0 10 < th dose dependent rect. 21 22
447 639.10 radiation 1.0 90 < th dose independent rect. 18 11
450 639.44 wind 1.0 90 > th dose dependent rect. 19 1
459 640.19 radiation 1.0 90 < th dose dependent rect. 10 10
463 640.44 wind 7.0 270 < th dose independent rect. 20 11
478 641.98 atmosphere 995.0 30 > th dose independent rect. 20 23
491 644.37 radiation 10.0 720 < th dose dependent rect. 17 3
507 646.33 temperature 15.0 90 > th dose independent rect. 5 13
518 647.37 radiation 10.0 90 < th dose dependent rect. 18 11
524 647.69 temperature 30.0 30 < th dose independent rect. 18 5
530 648.67 wind 9.0 90 < th dose independent rect. 5 13
542 650.05 wind 1.0 90 > th dose independent rect. 5 13
543 650.20 temperature 10.0 90 > th dose independent rect. 18 11
549 650.20 atmosphere 1015.0 90 < th dose independent rect. 5 13
552 650.33 radiation 40.0 270 < th dose dependent rect. 20 11
556 650.61 atmosphere 995.0 90 > th dose independent rect. 18 11
557 650.86 radiation 10.0 720 < th dose independent rect. 16 13
561 651.02 humidity 70.0 270 > th dose independent rect. 20 11
564 651.04 radiation 20.0 270 < th dose independent rect. 20 11
572 651.61 wind 9.0 90 < th dose independent rect. 18 11
574 651.69 temperature 10.0 270 > th dose independent rect. 20 11
575 651.69 temperature 30.0 270 < th dose independent rect. 20 11
576 651.69 humidity 50.0 270 > th dose independent rect. 20 11
578 651.69 atmosphere 995.0 270 > th dose independent rect. 20 11
580 651.69 temperature 10.0 270 > th dose independent rect. 7 13
581 651.69 atmosphere 1015.0 270 < th dose independent rect. 7 13
584 651.99 radiation 1.0 90 > th dose independent sin 16 NA
585 651.99 radiation 1.0 90 < th dose dependent sin 17 NA
592 652.24 radiation 1.0 90 < th dose independent sin 16 NA
593 652.36 radiation 40.0 14400 < th dose dependent rect. 19 5
640 652.50 radiation 10.0 1440 < th dose dependent rect. 19 5
645 652.54 temperature 10.0 1440 > th dose independent rect. 19 5
648 652.54 temperature 30.0 1440 < th dose independent rect. 19 5
652 652.54 humidity 50.0 1440 > th dose independent rect. 19 5
654 652.54 atmosphere 995.0 1440 > th dose independent rect. 19 5
655 652.54 radiation 1.0 1440 < th dose independent rect. 19 5
675 652.54 temperature 10.0 1440 > th dose independent rect. 24 19
717 655.08 temperature 30.0 30 < th dose independent rect. 18 11
720 655.42 radiation 40.0 90 < th dose independent rect. 13 5
730 656.48 temperature 10.0 90 > th dose dependent rect. 5 13
736 656.98 precipitation 0.1 270 < th dose independent rect. 20 11
737 656.98 precipitation 0.1 270 < th dose dependent rect. 20 11
746 657.80 precipitation 0.1 90 < th dose independent rect. 13 5
747 657.80 precipitation 0.1 90 < th dose dependent rect. 13 5
765 658.92 temperature 10.0 1440 > th dose independent rect. 19 11
768 658.92 temperature 30.0 1440 < th dose independent rect. 19 11
772 658.92 humidity 50.0 1440 > th dose independent rect. 19 11
774 658.92 atmosphere 995.0 1440 > th dose independent rect. 19 11
775 658.92 radiation 20.0 1440 < th dose independent rect. 19 11
784 658.92 temperature 10.0 1440 > th dose independent rect. 6 13
790 659.19 temperature 10.0 1440 > th dose independent rect. 15 4
795 659.19 temperature 10.0 1440 > th dose independent rect. 19 20
803 659.86 radiation 20.0 10 < th dose independent rect. 21 22
804 660.05 precipitation 0.1 90 < th dose independent rect. 23 19
805 660.05 precipitation 0.1 90 < th dose dependent rect. 23 19
806 660.06 humidity 50.0 720 > th dose independent rect. 17 3
807 660.06 precipitation 0.1 90 < th dose independent rect. 15 3
808 660.06 precipitation 0.1 90 < th dose dependent rect. 15 3
817 660.83 radiation 10.0 720 < th dose independent rect. 16 11
833 661.72 wind 1.0 90 > th dose independent rect. 18 5
849 662.42 temperature 20.0 90 > th dose independent rect. 18 15
885 663.08 atmosphere 1015.0 90 < th dose independent rect. 18 19
890 663.38 atmosphere 1015.0 90 < th dose independent rect. 18 11
891 663.57 wind 9.0 270 < th dose independent rect. 7 13
898 664.17 atmosphere 1010.0 90 < th dose independent rect. 18 5
901 664.38 atmosphere 1015.0 30 < th dose independent rect. 20 23
903 664.61 wind 1.0 90 > th dose independent rect. 13 5
914 664.99 temperature 20.0 270 > th dose independent rect. 16 11
935 666.17 temperature 10.0 90 > th dose independent rect. 13 5
937 666.17 atmosphere 1010.0 90 < th dose independent rect. 13 5
939 666.17 temperature 10.0 90 > th dose independent rect. 18 19
952 666.43 atmosphere 995.0 90 > th dose independent rect. 18 19
990 666.59 radiation 1.0 90 < th dose independent rect. 10 10
999 666.67 wind 9.0 90 < th dose independent rect. 13 5