Os03g0113200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF295 family protein.
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Os03g0113200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF295 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 174.6 | 0.621 | 2.45 | 3.65 | 0.0493 | -39.8 | 0.177 | 249 | -0.0613 | 14.3 | 995.8 | 735 | -- | -- |
| 190.14 | 0.647 | 3.04 | 0.157 | 0.00681 | 1.5 | -0.214 | -- | -0.0769 | 19.1 | 995.8 | 735 | -- | -- |
| 174.31 | 0.615 | 2.45 | 3.66 | 0.0557 | -39.8 | -- | 250 | -0.0563 | 16 | 996 | 706 | -- | -- |
| 178.35 | 0.622 | 3.03 | 0.118 | 0.0366 | 1.69 | -- | -- | -0.057 | 18.3 | 997 | 766 | -- | -- |
| 174.41 | 0.615 | 2.44 | 3.7 | -- | -41.6 | -- | 261 | -0.0622 | -- | 995.9 | 685 | -- | -- |
| 194.96 | 0.655 | 3.04 | 0.181 | 0.0344 | -- | -0.122 | -- | -0.0866 | 20.2 | -- | -- | -- | -- |
| 195 | 0.654 | 3.04 | 0.184 | 0.0346 | -- | -- | -- | -0.0867 | 20.2 | -- | -- | -- | -- |
| 178.41 | 0.622 | 3.03 | 0.114 | -- | 1.69 | -- | -- | -0.0588 | -- | 997 | 765 | -- | -- |
| 178.67 | 0.623 | 3.04 | -- | 0.0401 | 1.71 | -- | -- | -0.0708 | 17 | 997 | 778 | -- | -- |
| 195.07 | 0.653 | 3.04 | 0.184 | -- | -- | -- | -- | -0.0871 | -- | -- | -- | -- | -- |
| 195.9 | 0.655 | 3.05 | -- | 0.0338 | -- | -- | -- | -0.107 | 20.6 | -- | -- | -- | -- |
| 178.75 | 0.623 | 3.04 | -- | -- | 1.71 | -- | -- | -0.0708 | -- | 997 | 764 | -- | -- |
| 195.96 | 0.653 | 3.05 | -- | -- | -- | -- | -- | -0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.56 | atmosphere | 995 | 720 | < th | dose independent | rect. | 18 | 22 |
| 2 | 172.19 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 18 | 22 |
| 3 | 172.48 | atmosphere | 995 | 720 | > th | dose independent | sin | 7 | NA |
| 4 | 172.49 | atmosphere | 995 | 720 | < th | dose independent | sin | 7 | NA |
| 7 | 173.02 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 21 | 173.13 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 49 | 173.23 | atmosphere | 995 | 720 | < th | dose dependent | sin | 7 | NA |
| 50 | 173.23 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 20 | 19 |
| 53 | 173.60 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 21 | 15 |
| 89 | 174.23 | atmosphere | 995 | 720 | < th | dose independent | rect. | 14 | 1 |
| 130 | 174.23 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 184 | 174.40 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 186 | 174.42 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 228 | 174.91 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 274 | 175.10 | atmosphere | 995 | 720 | > th | dose independent | no | NA | NA |
| 286 | 175.18 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 15 | 22 |
| 304 | 175.28 | atmosphere | 1000 | 30 | < th | dose dependent | sin | 8 | NA |
| 319 | 175.40 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 20 | 14 |
| 382 | 175.76 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 390 | 175.82 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 415 | 175.89 | atmosphere | 995 | 720 | < th | dose independent | no | NA | NA |
| 614 | 175.93 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 642 | 176.02 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 650 | 176.06 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 24 | 12 |
| 655 | 176.08 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 659 | 176.09 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 23 | 7 |
| 660 | 176.09 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 9 | 22 |
| 696 | 176.22 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 698 | 176.22 | atmosphere | 1000 | 720 | < th | dose dependent | sin | 12 | NA |
| 699 | 176.22 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 14 | 20 |
| 716 | 176.27 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 738 | 176.36 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 773 | 176.44 | radiation | 10 | 10 | < th | dose dependent | rect. | 7 | 8 |
| 774 | 176.45 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 790 | 176.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 11 |
| 792 | 176.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 15 |
| 841 | 176.60 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 7 |
| 895 | 176.67 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 964 | 176.85 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 976 | 176.87 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 17 | 14 |