Os03g0113000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0113000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 587.27 | 1.14 | 5.05 | -6.01 | 1.56 | 4.38 | -1.09 | -14.5 | -0.672 | 8.79 | 25.94 | 1183 | 10.4 | -- |
| 635.65 | 1.17 | 4.67 | -2.78 | 1.58 | 3.13 | -0.634 | -- | -0.127 | 8.84 | 24.96 | 1114 | 10 | -- |
| 587.79 | 1.13 | 5.03 | -6.08 | 1.53 | 4.5 | -- | -16.1 | -0.47 | 8.41 | 26.37 | 1196 | 9.08 | -- |
| 636.18 | 1.17 | 4.73 | -2.76 | 1.52 | 3.19 | -- | -- | -0.32 | 9.2 | 24.27 | 1110 | 10 | -- |
| 697.65 | 1.23 | 5.04 | -6.01 | -- | 4.58 | -- | -15.7 | -0.402 | -- | 26.12 | 1231 | 7.6 | -- |
| 948.44 | 1.44 | 4.63 | -1.96 | 1.68 | -- | 0.426 | -- | 0.0928 | 6.86 | -- | -- | -- | -- |
| 948.85 | 1.44 | 4.63 | -1.95 | 1.68 | -- | -- | -- | 0.0924 | 6.93 | -- | -- | -- | -- |
| 708.95 | 1.24 | 4.82 | -2.88 | -- | 4.43 | -- | -- | -0.559 | -- | 10.94 | 1141 | 8.14 | -- |
| 820.93 | 1.33 | 4.49 | -- | 1.63 | 2.62 | -- | -- | 0.508 | 8.81 | 26.15 | 972 | 7.34 | -- |
| 1096.7 | 1.55 | 4.67 | -1.92 | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
| 1049.08 | 1.52 | 4.58 | -- | 1.66 | -- | -- | -- | 0.31 | 7.01 | -- | -- | -- | -- |
| 920.79 | 1.41 | 4.69 | -- | -- | 3.54 | -- | -- | -0.0967 | -- | -0.349 | 1212 | 8.81 | -- |
| 1193.45 | 1.61 | 4.62 | -- | -- | -- | -- | -- | 0.336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 608.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 3 | 608.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 5 |
| 35 | 614.22 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 49 | 615.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 230 | 629.92 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 244 | 631.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 257 | 632.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 260 | 632.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 275 | 634.00 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 291 | 635.47 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 295 | 635.84 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 9 |
| 300 | 636.21 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 310 | 637.22 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 311 | 637.43 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 312 | 637.44 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 315 | 637.77 | wind | 5 | 43200 | > th | dose dependent | sin | 23 | NA |
| 319 | 637.83 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 365 | 640.34 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 13 |
| 409 | 641.58 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 415 | 641.76 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 436 | 642.34 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 17 |
| 448 | 642.60 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 451 | 642.71 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 18 |
| 461 | 642.85 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 465 | 642.92 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 486 | 643.56 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 539 | 644.66 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 547 | 644.82 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 560 | 645.18 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 576 | 645.48 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 577 | 645.51 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 17 |
| 584 | 645.57 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 585 | 645.58 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 597 | 645.68 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 18 |
| 611 | 645.97 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 623 | 646.11 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 660 | 646.57 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 714 | 647.35 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 715 | 647.39 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 720 | 647.43 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 21 |
| 923 | 649.84 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 22 |
| 933 | 649.98 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 953 | 650.12 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 996 | 650.51 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 23 |