Os03g0112700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0112700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, CCCH-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.85 | 0.248 | 11 | 1.04 | 0.748 | -0.632 | 0.196 | 0.947 | 0.457 | 6.67 | 24.1 | 106 | -- | -- |
| 28.29 | 0.248 | 11 | 0.92 | 0.759 | -0.545 | 0.167 | -- | 0.416 | 6.6 | 24.16 | 117 | -- | -- |
| 27.94 | 0.246 | 11 | 1.04 | 0.748 | -0.639 | -- | 0.936 | 0.457 | 6.69 | 24.1 | 105 | -- | -- |
| 28.28 | 0.248 | 11 | 0.91 | 0.755 | -0.549 | -- | -- | 0.417 | 6.6 | 24.2 | 109 | -- | -- |
| 43.51 | 0.307 | 10.9 | 1.35 | -- | -1.27 | -- | 2.29 | 0.569 | -- | 24.37 | 360 | -- | -- |
| 33.04 | 0.269 | 11 | 0.811 | 0.941 | -- | 0.341 | -- | 0.354 | 5.97 | -- | -- | -- | -- |
| 33.33 | 0.27 | 11 | 0.814 | 0.943 | -- | -- | -- | 0.353 | 5.98 | -- | -- | -- | -- |
| 45.57 | 0.314 | 11 | 1.02 | -- | -1.08 | -- | -- | 0.476 | -- | 24.38 | 336 | -- | -- |
| 49.07 | 0.326 | 11 | -- | 0.844 | -0.314 | -- | -- | 0.285 | 6.24 | 24.8 | 111 | -- | -- |
| 79.44 | 0.416 | 11 | 0.841 | -- | -- | -- | -- | 0.374 | -- | -- | -- | -- | -- |
| 50.77 | 0.333 | 11 | -- | 0.956 | -- | -- | -- | 0.262 | 5.94 | -- | -- | -- | -- |
| 72.21 | 0.396 | 11 | -- | -- | -0.938 | -- | -- | 0.345 | -- | 24.6 | 331 | -- | -- |
| 98.12 | 0.462 | 11 | -- | -- | -- | -- | -- | 0.281 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 4 | 26.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 11 | 26.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 14 | 26.85 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 31 | 26.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 49 | 27.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 14 |
| 81 | 27.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 9 |
| 143 | 27.50 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 150 | 27.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 13 |
| 192 | 27.61 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 197 | 27.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 220 | 27.67 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 302 | 27.81 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 409 | 27.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 16 |
| 427 | 28.00 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 19 |
| 442 | 28.03 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 452 | 28.03 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 503 | 28.07 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 505 | 28.08 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 517 | 28.08 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 518 | 28.08 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 519 | 28.09 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 590 | 28.13 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 639 | 28.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 789 | 28.26 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 845 | 28.29 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 9 |
| 857 | 28.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 919 | 28.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 924 | 28.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 968 | 28.34 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 9 |
| 991 | 28.35 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 992 | 28.35 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 995 | 28.35 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 7 |
| 997 | 28.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |