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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0111800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD40-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.3 (0.0333) R2 : 0.462
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.59 (0.0859) R2dC : 0.406 R2C : 0.378
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.52 (0.07) R2dN8 : 0.0839 R2N8 : 0.0556
σ : 0.628
deviance : 180.08
__
_____
C
peak time of C : 16.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
158.06 0.591 6.29 0.414 1.52 1.07 0.815 0.491 0.603 16.5 78.92 1363 -- --
157.97 0.585 6.29 0.455 1.5 1.1 0.867 -- 0.611 16.6 78.98 1320 -- --
159.64 0.588 6.29 0.411 1.51 1.08 -- 0.63 0.607 16.6 78.89 1329 -- --
159.96 0.589 6.28 0.461 1.5 1.12 -- -- 0.618 16.6 78.88 1320 -- --
261.59 0.757 6.28 0.291 -- -0.673 -- -0.202 0.549 -- 78.89 1329 -- --
173.13 0.617 6.3 0.399 1.59 -- 0.982 -- 0.56 16.5 -- -- -- --
175.73 0.621 6.29 0.406 1.6 -- -- -- 0.565 16.5 -- -- -- --
261.85 0.757 6.28 0.285 -- -0.675 -- -- 0.548 -- 78.88 1320 -- --
165.56 0.599 6.29 -- 1.5 1.07 -- -- 0.565 16.6 78.58 1320 -- --
312.5 0.826 6.28 0.344 -- -- -- -- 0.523 -- -- -- -- --
180.08 0.628 6.3 -- 1.59 -- -- -- 0.52 16.5 -- -- -- --
263.99 0.759 6.28 -- -- -0.681 -- -- 0.516 -- 78.88 1320 -- --
315.62 0.829 6.29 -- -- -- -- -- 0.484 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 153.46 radiation 10.0 1440 < th dose dependent rect. 10 4
3 153.88 humidity 70.0 1440 > th dose dependent rect. 12 2
4 154.06 radiation 10.0 1440 < th dose dependent rect. 12 2
8 154.28 humidity 80.0 1440 > th dose independent rect. 24 16
12 154.39 humidity 80.0 1440 < th dose independent rect. 24 16
18 154.54 humidity 50.0 720 > th dose dependent rect. 15 12
19 154.60 wind 5.0 90 < th dose independent rect. 3 5
26 154.76 radiation 10.0 1440 > th dose independent rect. 11 2
32 154.93 wind 5.0 270 < th dose independent rect. 3 2
37 155.00 precipitation 0.1 270 < th dose independent rect. 3 2
38 155.00 precipitation 0.1 270 < th dose dependent rect. 3 2
40 155.03 precipitation 0.1 90 < th dose independent rect. 3 5
41 155.03 precipitation 0.1 90 < th dose dependent rect. 3 5
43 155.05 temperature 20.0 90 > th dose independent rect. 23 14
48 155.12 humidity 80.0 1440 > th dose independent rect. 12 2
53 155.21 precipitation 0.1 10 < th dose independent rect. 3 6
54 155.21 precipitation 0.1 10 < th dose dependent rect. 3 6
60 155.32 wind 5.0 14400 < th dose dependent rect. 2 1
69 155.45 atmosphere 1015.0 270 < th dose dependent rect. 3 2
71 155.49 atmosphere 1015.0 90 < th dose dependent rect. 3 5
72 155.51 humidity 80.0 1440 < th dose independent rect. 12 2
81 155.68 temperature 15.0 90 > th dose independent rect. 8 19
86 155.72 wind 1.0 14400 > th dose dependent rect. 2 1
88 155.73 radiation 10.0 1440 < th dose independent rect. 12 3
96 155.85 humidity 60.0 14400 > th dose independent rect. 4 4
111 155.99 wind 7.0 270 < th dose dependent rect. 3 2
131 156.14 radiation 1.0 1440 < th dose independent rect. 8 5
137 156.18 temperature 10.0 90 > th dose independent rect. 3 5
139 156.18 temperature 30.0 90 < th dose independent rect. 3 5
140 156.18 humidity 50.0 90 > th dose independent rect. 3 5
142 156.18 atmosphere 995.0 90 > th dose independent rect. 3 5
143 156.18 atmosphere 1015.0 90 < th dose independent rect. 3 5
148 156.22 radiation 40.0 90 < th dose independent rect. 3 5
165 156.34 wind 9.0 90 < th dose dependent rect. 3 5
172 156.42 humidity 80.0 1440 < th dose independent sin 3 NA
175 156.43 wind 9.0 90 < th dose independent rect. 8 19
184 156.52 atmosphere 995.0 90 > th dose independent rect. 8 19
204 156.60 humidity 90.0 720 > th dose dependent rect. 18 7
205 156.61 humidity 90.0 270 < th dose independent rect. 3 2
251 156.90 humidity 80.0 1440 > th dose independent sin 3 NA
263 156.94 humidity 90.0 720 < th dose dependent rect. 20 1
270 156.98 humidity 90.0 1440 < th dose dependent rect. 12 2
279 157.01 humidity 90.0 720 > th dose dependent rect. 22 2
296 157.09 radiation 1.0 1440 > th dose independent rect. 8 2
298 157.09 radiation 1.0 1440 < th dose dependent rect. 8 9
322 157.16 temperature 15.0 270 > th dose independent rect. 5 22
341 157.23 temperature 10.0 270 > th dose independent rect. 3 2
343 157.23 temperature 30.0 270 < th dose independent rect. 3 2
344 157.23 humidity 50.0 270 > th dose independent rect. 3 2
347 157.23 atmosphere 995.0 270 > th dose independent rect. 3 2
348 157.23 atmosphere 1010.0 270 < th dose independent rect. 3 2
350 157.23 radiation 20.0 270 < th dose independent rect. 3 2
354 157.23 radiation 30.0 270 < th dose dependent rect. 3 2
358 157.24 radiation 1.0 270 < th dose dependent rect. 3 2
362 157.25 radiation 1.0 270 < th dose independent rect. 3 2
369 157.27 temperature 30.0 270 < th dose dependent rect. 3 2
395 157.35 humidity 90.0 720 > th dose dependent rect. 14 11
399 157.36 humidity 90.0 720 > th dose dependent rect. 12 13
418 157.44 wind 5.0 90 < th dose independent rect. 13 19
422 157.46 humidity 90.0 720 < th dose dependent rect. 18 13
447 157.55 atmosphere 1015.0 90 < th dose independent rect. 8 19
471 157.63 humidity 50.0 720 > th dose dependent rect. 15 19
486 157.68 precipitation 0.1 10 < th dose independent rect. 9 18
487 157.68 precipitation 0.1 10 < th dose dependent rect. 9 18
509 157.79 humidity 50.0 720 > th dose dependent rect. 22 5
514 157.81 humidity 60.0 720 > th dose dependent sin 14 NA
525 157.85 precipitation 0.1 90 < th dose independent rect. 8 19
527 157.85 precipitation 0.1 90 < th dose dependent rect. 8 19
534 157.89 wind 9.0 270 < th dose independent rect. 5 22
605 158.10 temperature 30.0 90 < th dose dependent rect. 3 5
608 158.11 radiation 1.0 1440 > th dose independent rect. 8 6
653 158.26 humidity 90.0 720 < th dose independent rect. 20 1
655 158.27 wind 3.0 14400 < th dose independent rect. 2 2
663 158.30 precipitation 0.1 270 > th dose independent rect. 2 2
678 158.32 temperature 10.0 90 > th dose dependent rect. 3 5
682 158.33 precipitation 0.1 270 > th dose dependent rect. 2 2
730 158.44 humidity 50.0 30 > th dose independent rect. 9 18
740 158.46 precipitation 0.1 270 < th dose independent rect. 10 23
741 158.46 precipitation 0.1 270 < th dose dependent rect. 10 23
742 158.47 temperature 20.0 90 < th dose independent rect. 2 10
749 158.49 humidity 80.0 720 > th dose independent rect. 12 15
784 158.56 wind 1.0 270 > th dose independent rect. 3 1
821 158.65 radiation 40.0 90 < th dose dependent rect. 3 5
823 158.66 humidity 80.0 720 > th dose independent rect. 14 13
832 158.69 humidity 90.0 720 < th dose dependent rect. 19 3
841 158.71 wind 3.0 14400 > th dose independent rect. 2 2
871 158.77 humidity 80.0 720 > th dose independent rect. 6 21
892 158.80 humidity 60.0 1440 > th dose dependent rect. 24 16
933 158.88 humidity 90.0 720 < th dose independent rect. 19 5
970 158.95 humidity 90.0 720 < th dose dependent sin 13 NA
973 158.96 humidity 90.0 30 < th dose independent rect. 3 5