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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0111600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1618 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.41 (0.039) R2 : 0.217
β1 : -1.3 (0.161) R2dD : 0.148 R2D : -0.0865
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.89 (0.17) R2dE : 0.3 R2E : 0.0344
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.451 (0.0883) R2dN8 : 0.0693 R2N8 : -0.0507
σ : 0.716
deviance : 236.6
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 12.72
memory length : 4511
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
222.08 0.7 4.4 -1.24 0.99 2.42 -0.308 -1.87 -0.5 7.44 13.98 505 -- --
224.16 0.697 4.36 -0.938 0.995 2.39 0.0762 -- -0.416 7.54 11.36 516 -- --
222.29 0.694 4.4 -1.2 0.993 2.43 -- -1.63 -0.491 7.42 13.35 496 -- --
224.18 0.697 4.36 -0.933 0.995 2.38 -- -- -0.417 7.51 11.14 515 -- --
239.18 0.72 4.43 -1.34 -- 1.83 -- -1.67 -0.491 -- 10.5 1490 -- --
289.58 0.798 4.3 -0.383 0.387 -- -0.123 -- -0.0613 8.62 -- -- -- --
289.63 0.797 4.3 -0.386 0.386 -- -- -- -0.061 8.72 -- -- -- --
236.6 0.716 4.41 -1.3 -- 1.89 -- -- -0.451 -- 12.72 4511 -- --
244.53 0.728 4.33 -- 0.873 1.96 -- -- -0.26 7.45 12.77 473 -- --
298.06 0.807 4.31 -0.386 -- -- -- -- -0.0579 -- -- -- -- --
293.56 0.801 4.29 -- 0.385 -- -- -- -0.018 8.8 -- -- -- --
262.89 0.755 4.35 -- -- 1.4 -- -- -0.226 -- 11.21 1491 -- --
301.98 0.811 4.3 -- -- -- -- -- -0.0151 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 215.98 temperature 15 720 > th dose dependent rect. 23 17
5 216.82 temperature 15 720 > th dose dependent rect. 21 18
28 218.75 temperature 20 720 > th dose dependent sin 6 NA
33 219.12 temperature 15 720 > th dose dependent rect. 1 15
81 220.61 atmosphere 1000 43200 < th dose dependent rect. 10 3
89 220.93 temperature 10 270 > th dose dependent rect. 1 23
100 221.17 temperature 15 270 > th dose dependent rect. 23 23
106 221.36 temperature 15 270 > th dose dependent rect. 1 21
120 221.54 humidity 80 14400 > th dose dependent rect. 20 2
148 222.12 temperature 10 720 > th dose dependent rect. 12 23
154 222.22 wind 9 43200 > th dose independent rect. 20 4
155 222.22 humidity 70 14400 > th dose dependent rect. 18 1
162 222.37 humidity 80 14400 > th dose independent rect. 17 3
164 222.39 temperature 20 720 > th dose dependent rect. 23 12
194 222.77 humidity 80 14400 < th dose independent rect. 18 1
209 223.06 wind 9 43200 < th dose independent rect. 20 4
211 223.09 wind 9 43200 > th dose independent rect. 20 7
216 223.19 humidity 80 14400 < th dose independent rect. 17 3
254 223.83 wind 9 43200 < th dose independent rect. 20 7
264 223.92 temperature 30 720 < th dose dependent rect. 21 16
280 224.12 radiation 30 4320 < th dose independent rect. 15 17
282 224.16 temperature 10 1440 > th dose dependent rect. 7 2
291 224.21 wind 9 43200 > th dose dependent rect. 20 4
294 224.24 temperature 15 30 > th dose dependent rect. 23 23
308 224.43 radiation 20 4320 > th dose independent rect. 16 16
312 224.45 temperature 30 1440 < th dose dependent rect. 7 2
321 224.60 temperature 20 4320 > th dose dependent rect. 10 1
322 224.60 wind 9 43200 > th dose dependent rect. 20 9
326 224.63 wind 9 43200 > th dose dependent rect. 20 7
354 224.91 temperature 15 720 > th dose dependent no NA NA
362 224.98 temperature 20 720 > th dose dependent rect. 1 10
371 225.04 temperature 15 720 > th dose dependent rect. 14 23
395 225.27 temperature 30 720 < th dose dependent sin 7 NA
403 225.30 temperature 10 720 > th dose dependent rect. 10 23
452 225.68 temperature 15 270 > th dose dependent rect. 4 16
454 225.68 temperature 30 720 < th dose dependent rect. 17 19
476 225.79 temperature 10 4320 > th dose dependent rect. 3 11
483 225.85 temperature 10 4320 > th dose dependent rect. 6 7
560 226.12 temperature 10 4320 > th dose dependent rect. 19 20
561 226.13 temperature 10 4320 > th dose dependent sin 4 NA
582 226.18 humidity 70 14400 > th dose independent rect. 14 2
583 226.18 wind 9 43200 < th dose independent rect. 20 11
621 226.27 humidity 70 14400 > th dose dependent rect. 17 10
623 226.27 temperature 10 720 > th dose dependent rect. 8 23
667 226.43 temperature 10 4320 > th dose dependent rect. 7 19
715 226.54 temperature 10 4320 > th dose dependent rect. 3 21
730 226.57 temperature 10 4320 > th dose dependent rect. 3 19
763 226.62 temperature 10 4320 > th dose dependent rect. 23 22
769 226.63 temperature 10 4320 > th dose dependent rect. 1 20
794 226.66 temperature 10 4320 > th dose dependent no NA NA
857 226.74 temperature 10 4320 > th dose dependent rect. 12 23
892 226.79 temperature 10 4320 > th dose dependent rect. 10 23
932 226.86 temperature 30 4320 < th dose dependent rect. 3 8
991 226.94 atmosphere 995 43200 > th dose independent rect. 4 12
998 226.95 atmosphere 1000 43200 < th dose dependent sin 23 NA