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Os03g0111500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to TA6 protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0133) R2 : 7.74e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00166 (0.028) R2dN8 : 9.99e-06 R2N8 : 7.74e-06
σ : 0.25
deviance : 28.75
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.22 0.201 12.4 -0.296 0.325 0.291 0.128 0.451 -0.0989 1.42 59 3938 -- --
18.52 0.2 12.4 -0.31 0.319 0.311 0.0842 -- -0.107 1.4 59 3937 -- --
18.28 0.199 12.4 -0.299 0.326 0.291 -- 0.437 -0.1 1.36 59 3934 -- --
18.56 0.201 12.4 -0.315 0.324 0.319 -- -- -0.11 1.35 58.91 3938 -- --
24.25 0.229 12.4 -0.391 -- 0.332 -- 0.329 -0.038 -- 58.88 13329 -- --
20.16 0.21 12.4 -0.342 0.303 -- 0.0829 -- -0.0414 1.52 -- -- -- --
20.18 0.21 12.4 -0.345 0.303 -- -- -- -0.0418 1.46 -- -- -- --
24.19 0.23 12.4 -0.337 -- 0.19 -- -- -0.0648 -- 64 7467 -- --
20.25 0.21 12.4 -- 0.339 0.364 -- -- -0.111 1.01 53 4053 -- --
25.83 0.237 12.4 -0.333 -- -- -- -- -0.0353 -- -- -- -- --
23.32 0.226 12.4 -- 0.297 -- -- -- -0.00334 1.42 -- -- -- --
26.03 0.238 12.4 -- -- 0.389 -- -- -0.0543 -- 51.95 4554 -- --
28.75 0.25 12.3 -- -- -- -- -- 0.00166 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.63 wind 3 14400 < th dose dependent rect. 20 2
3 17.88 wind 1 14400 > th dose independent rect. 18 4
7 17.96 humidity 60 4320 > th dose independent rect. 11 2
10 17.99 wind 1 14400 < th dose independent rect. 18 4
11 18.00 humidity 60 4320 < th dose independent rect. 11 2
17 18.07 humidity 60 4320 < th dose independent rect. 10 4
18 18.07 radiation 10 90 < th dose independent rect. 6 21
23 18.08 humidity 60 4320 < th dose independent rect. 18 20
26 18.09 humidity 60 4320 > th dose independent rect. 18 19
75 18.12 wind 1 14400 < th dose independent rect. 20 2
83 18.15 humidity 80 4320 > th dose independent rect. 8 1
95 18.18 humidity 60 4320 < th dose dependent rect. 12 1
98 18.19 humidity 70 4320 < th dose dependent rect. 10 3
114 18.20 radiation 10 4320 < th dose dependent rect. 7 3
116 18.22 radiation 20 720 < th dose dependent rect. 9 1
118 18.23 humidity 80 4320 < th dose independent rect. 8 2
127 18.24 humidity 70 4320 < th dose dependent rect. 10 1
130 18.25 humidity 80 4320 > th dose independent rect. 20 1
135 18.25 radiation 10 4320 < th dose dependent rect. 7 1
152 18.26 humidity 60 14400 < th dose independent rect. 17 16
159 18.27 humidity 60 14400 > th dose independent rect. 17 1
193 18.28 humidity 60 14400 > th dose independent rect. 17 16
199 18.29 humidity 60 4320 > th dose independent sin 7 NA
201 18.29 humidity 80 4320 < th dose independent rect. 20 1
221 18.29 humidity 60 14400 < th dose dependent rect. 16 18
224 18.30 humidity 60 14400 < th dose independent rect. 17 1
236 18.31 temperature 25 720 > th dose dependent rect. 15 8
239 18.31 temperature 25 720 > th dose dependent rect. 15 16
254 18.33 temperature 25 720 > th dose dependent sin 14 NA
286 18.35 humidity 60 4320 < th dose independent sin 5 NA
305 18.35 radiation 20 270 < th dose dependent rect. 5 22
311 18.36 humidity 70 4320 < th dose dependent sin 7 NA
328 18.36 radiation 20 90 < th dose dependent rect. 7 20
335 18.37 atmosphere 1005 43200 < th dose dependent rect. 7 1
341 18.38 radiation 10 720 < th dose independent rect. 9 1
344 18.38 atmosphere 1000 43200 > th dose independent rect. 2 7
352 18.38 atmosphere 1005 43200 < th dose dependent rect. 6 3
365 18.39 wind 1 43200 > th dose independent rect. 6 2
370 18.39 atmosphere 1000 43200 < th dose independent rect. 2 7
391 18.39 humidity 60 4320 < th dose dependent rect. 12 7
413 18.40 atmosphere 1000 43200 > th dose independent rect. 3 5
430 18.40 wind 1 1440 < th dose dependent rect. 8 3
438 18.40 radiation 20 30 < th dose dependent rect. 9 18
441 18.41 wind 1 43200 < th dose independent rect. 6 1
443 18.41 atmosphere 1000 43200 < th dose independent rect. 3 5
498 18.42 atmosphere 1000 43200 > th dose independent sin 7 NA
504 18.42 wind 5 270 < th dose independent rect. 15 10
520 18.42 humidity 60 4320 < th dose dependent sin 16 NA
522 18.42 humidity 70 4320 > th dose dependent rect. 8 1
537 18.43 atmosphere 1000 43200 < th dose independent sin 7 NA
581 18.43 radiation 40 270 < th dose dependent rect. 9 16
598 18.44 temperature 25 720 > th dose independent rect. 16 5
604 18.44 humidity 60 4320 < th dose independent rect. 10 9
669 18.44 humidity 60 14400 < th dose dependent rect. 16 3
673 18.44 radiation 20 10 < th dose dependent rect. 9 5
687 18.44 humidity 70 4320 < th dose dependent rect. 9 11
718 18.45 humidity 60 4320 > th dose independent no NA NA
720 18.45 humidity 60 4320 < th dose independent no NA NA
735 18.45 temperature 25 720 < th dose independent rect. 16 9
736 18.45 humidity 60 4320 > th dose independent rect. 10 9
780 18.45 radiation 30 270 < th dose independent rect. 11 14
984 18.45 humidity 70 4320 < th dose dependent no NA NA