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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0111000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.49 (0.0553) R2 : 0.389
β1 : -3.57 (0.238) R2dD : 0.562 R2D : -0.12
β2 : 0.702 (0.123) R2dC : 0.0484 R2C : -0.0254
β3 : -0.52 (0.338) R2dE : 0.00848 R2E : -0.0432
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.49 (1.13) R2dD*E : 0.299 R2D*E : -0.187
γ1 : -0.742 (0.111) R2dN8 : 0.0927 R2N8 : -0.0853
σ : 0.907
deviance : 378.95
__
_____
C
peak time of C : 1.79
E
wheather : radiation
threshold : 0.01431
memory length : 5479
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
378.84 0.914 5.49 -3.57 0.703 -0.5 -0.22 8.38 -0.741 1.73 0.01198 5496 -- --
442.57 0.98 5.46 -2.23 1.4 -1.93 -1.46 -- -0.754 1.66 0.4796 10469 -- --
378.95 0.907 5.49 -3.57 0.702 -0.52 -- 8.49 -0.742 1.79 0.01431 5479 -- --
423.95 0.959 5.37 -2.73 1.3 -2.75 -- -- -0.642 1.59 1.198e-05 10478 -- --
406.79 0.939 5.49 -3.57 -- -1.01 -- 7.84 -0.781 -- 0.04951 5467 -- --
501.02 1.05 5.23 -1.79 0.72 -- -1.44 -- -0.229 0.707 -- -- -- --
509.12 1.06 5.23 -1.74 0.736 -- -- -- -0.224 1.3 -- -- -- --
443.72 0.981 5.3 -2.74 -- -2.5 -- -- -0.613 -- 0.09909 11245 -- --
568.39 1.11 5.23 -- 0.92 -1.36 -- -- -0.219 2.17 1.046 9155 -- --
542.58 1.09 5.22 -1.71 -- -- -- -- -0.209 -- -- -- -- --
589.22 1.14 5.18 -- 0.707 -- -- -- -0.0301 1.21 -- -- -- --
588.13 1.13 5.21 -- -- -1.26 -- -- -0.179 -- 0.331 9805 -- --
620.12 1.16 5.17 -- -- -- -- -- -0.0188 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 379.49 wind 7 43200 < th dose dependent rect. 16 1
3 379.98 wind 1 43200 > th dose dependent rect. 16 1
19 382.68 wind 1 43200 > th dose dependent rect. 15 4
25 383.48 wind 5 43200 < th dose dependent rect. 13 8
32 383.98 radiation 10 14400 > th dose dependent rect. 5 2
60 384.76 wind 5 14400 < th dose independent rect. 14 2
63 384.91 humidity 70 43200 > th dose independent rect. 10 1
71 385.36 wind 5 14400 > th dose independent rect. 14 2
77 385.62 humidity 90 43200 < th dose dependent rect. 11 1
96 386.49 humidity 70 43200 < th dose independent rect. 10 1
103 386.82 wind 1 43200 < th dose dependent rect. 10 15
104 386.83 humidity 70 43200 > th dose independent rect. 2 13
105 386.91 wind 1 43200 < th dose dependent rect. 9 17
110 387.05 radiation 1 14400 < th dose dependent rect. 18 16
127 387.43 humidity 70 43200 > th dose independent rect. 3 9
130 387.48 wind 9 43200 < th dose independent rect. 18 1
132 387.49 humidity 70 43200 < th dose dependent rect. 13 1
137 387.55 wind 9 43200 > th dose dependent rect. 18 1
138 387.57 wind 3 43200 > th dose independent rect. 12 5
142 387.59 humidity 90 43200 < th dose dependent rect. 8 5
150 387.75 humidity 80 43200 < th dose dependent rect. 8 7
159 387.92 wind 3 43200 > th dose independent rect. 12 9
170 388.01 radiation 1 43200 < th dose dependent rect. 7 1
180 388.15 humidity 70 43200 < th dose independent rect. 1 14
182 388.17 humidity 80 43200 < th dose dependent rect. 4 11
187 388.38 radiation 30 43200 < th dose independent rect. 17 14
201 388.47 radiation 10 43200 < th dose independent rect. 18 12
209 388.57 humidity 70 43200 > th dose independent sin 4 NA
223 388.79 radiation 1 14400 < th dose dependent rect. 18 1
227 388.83 radiation 1 14400 < th dose dependent rect. 18 10
228 388.84 radiation 1 14400 < th dose dependent rect. 18 4
254 389.06 radiation 1 43200 < th dose independent rect. 7 2
256 389.07 wind 1 43200 < th dose independent rect. 21 1
259 389.11 radiation 1 43200 < th dose independent rect. 23 6
261 389.12 radiation 1 43200 > th dose independent rect. 7 2
275 389.24 temperature 20 43200 > th dose independent rect. 7 1
293 389.37 radiation 30 43200 < th dose independent rect. 6 1
294 389.38 temperature 20 43200 < th dose independent rect. 7 1
299 389.40 radiation 30 43200 < th dose independent rect. 23 8
317 389.52 radiation 20 43200 < th dose dependent rect. 23 6
321 389.53 humidity 70 43200 < th dose independent rect. 2 10
332 389.64 wind 9 43200 > th dose independent rect. 18 1
341 389.73 wind 1 43200 > th dose independent rect. 11 1
346 389.77 humidity 90 43200 < th dose dependent rect. 8 1
354 389.88 atmosphere 1005 43200 < th dose independent rect. 9 1
400 390.20 humidity 70 43200 < th dose independent sin 4 NA
401 390.20 radiation 1 43200 > th dose independent rect. 4 1
432 390.29 radiation 10 43200 < th dose independent rect. 18 1
446 390.37 radiation 40 43200 < th dose independent rect. 15 17
450 390.40 wind 3 43200 < th dose independent rect. 12 9
452 390.41 humidity 80 43200 < th dose dependent sin 3 NA
496 390.73 radiation 1 14400 < th dose dependent sin 9 NA
499 390.76 radiation 40 43200 < th dose independent rect. 15 4
500 390.76 radiation 40 43200 < th dose independent rect. 15 13
531 390.94 radiation 1 14400 < th dose dependent rect. 3 7
542 390.98 radiation 1 14400 < th dose dependent rect. 21 13
557 391.05 radiation 40 43200 < th dose independent rect. 15 9
559 391.05 wind 3 43200 > th dose dependent rect. 18 1
566 391.07 temperature 25 43200 < th dose dependent rect. 8 2
622 391.30 wind 5 43200 > th dose independent rect. 11 1
627 391.35 radiation 1 4320 > th dose independent rect. 4 1
660 391.44 wind 1 43200 < th dose dependent sin 18 NA
673 391.49 atmosphere 1005 43200 > th dose independent rect. 9 1
694 391.58 wind 3 43200 < th dose dependent rect. 20 1
733 391.73 wind 5 43200 < th dose independent rect. 11 1
790 392.05 wind 1 43200 < th dose independent rect. 14 12
795 392.10 wind 1 43200 < th dose independent rect. 11 15
809 392.17 wind 1 43200 > th dose independent rect. 11 15
862 392.35 temperature 20 43200 > th dose independent rect. 18 22
881 392.42 temperature 20 43200 > th dose independent rect. 7 22
886 392.43 temperature 20 43200 > th dose independent rect. 24 23
887 392.43 wind 1 43200 < th dose dependent rect. 11 1
891 392.44 temperature 20 43200 < th dose independent rect. 18 21
892 392.44 temperature 20 43200 > th dose independent rect. 12 22
912 392.47 temperature 20 43200 > th dose independent rect. 2 21
940 392.52 temperature 20 43200 < th dose independent rect. 13 21
960 392.55 temperature 20 43200 < th dose independent rect. 2 21
970 392.56 temperature 20 43200 < th dose independent rect. 24 23
976 392.57 temperature 20 43200 < th dose independent rect. 7 22
987 392.59 temperature 20 43200 > th dose independent no NA NA