Os03g0110500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : KIP1-like domain containing protein.
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Os03g0110500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : KIP1-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 400.99 | 0.941 | 6.06 | -2.85 | 2.37 | 4.96 | -0.0279 | -6.02 | -1.31 | 17.9 | 21.6 | 1634 | -- | -- |
| 421.45 | 0.956 | 5.89 | -2.19 | 2.74 | 5.36 | -0.344 | -- | -1 | 17.6 | 17.34 | 5487 | -- | -- |
| 400.71 | 0.932 | 6.05 | -2.82 | 2.23 | 5.03 | -- | -5.97 | -1.31 | 17.9 | 21.51 | 1718 | -- | -- |
| 421.4 | 0.956 | 5.89 | -2.24 | 2.69 | 5.5 | -- | -- | -1.03 | 17.6 | 16.95 | 5487 | -- | -- |
| 453.47 | 0.992 | 5.88 | -1.91 | -- | 6.31 | -- | -6.1 | -1.06 | -- | 21.13 | 487 | -- | -- |
| 1102.77 | 1.56 | 5.61 | 0.587 | 2.53 | -- | -0.169 | -- | 0.241 | 18.1 | -- | -- | -- | -- |
| 1102.84 | 1.56 | 5.61 | 0.588 | 2.53 | -- | -- | -- | 0.24 | 18.1 | -- | -- | -- | -- |
| 481.52 | 1.02 | 5.8 | -0.9 | -- | 6.1 | -- | -- | -0.855 | -- | 20.42 | 498 | -- | -- |
| 455.62 | 0.994 | 5.8 | -- | 2.13 | 4.48 | -- | -- | -0.649 | 17.6 | 21.3 | 1906 | -- | -- |
| 1435.39 | 1.77 | 5.57 | 0.516 | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
| 1111.95 | 1.56 | 5.63 | -- | 2.52 | -- | -- | -- | 0.175 | 18.1 | -- | -- | -- | -- |
| 500.95 | 1.04 | 5.77 | -- | -- | 5.86 | -- | -- | -0.715 | -- | 20.7 | 490 | -- | -- |
| 1442.42 | 1.77 | 5.58 | -- | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 406.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 18 |
| 27 | 409.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 64 | 412.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 71 | 412.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 79 | 413.00 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 104 | 413.74 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 147 | 415.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 156 | 415.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 287 | 423.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 395 | 427.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 396 | 427.66 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 8 |
| 530 | 431.01 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 639 | 432.55 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 763 | 434.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 13 |
| 821 | 435.53 | temperature | 25 | 4320 | < th | dose independent | sin | 2 | NA |
| 930 | 436.73 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 13 |