Os03g0110200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to mutator-like transposase [Oryza sativa (japonica cultivar-group)].
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Os03g0110200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to mutator-like transposase [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.53 | 0.569 | 3.46 | -0.373 | 0.0372 | -3.53 | 0.451 | 10 | 0.174 | 8.18 | 0.2784 | 1369 | -- | -- |
| 164.96 | 0.603 | 3.35 | -0.0168 | 0.0252 | 0.0178 | 0.47 | -- | 0.087 | 8.59 | 0.2784 | 1369 | -- | -- |
| 147.14 | 0.565 | 3.46 | -0.356 | 0.0358 | -3.55 | -- | 10.1 | 0.174 | 8.66 | 0.2763 | 1359 | -- | -- |
| 160.89 | 0.591 | 3.35 | -0.041 | 0.0277 | -0.651 | -- | -- | 0.184 | 7.7 | 4.459e-06 | 1227 | -- | -- |
| 147.21 | 0.565 | 3.46 | -0.357 | -- | -3.54 | -- | 10.1 | 0.174 | -- | 0.2641 | 1359 | -- | -- |
| 164.96 | 0.602 | 3.35 | -0.0172 | 0.0252 | -- | 0.47 | -- | 0.0871 | 8.6 | -- | -- | -- | -- |
| 165.68 | 0.603 | 3.35 | -0.00242 | 0.0257 | -- | -- | -- | 0.0869 | 7.55 | -- | -- | -- | -- |
| 160.11 | 0.589 | 3.35 | -0.147 | -- | -0.817 | -- | -- | 0.12 | -- | 0.5885 | 1254 | -- | -- |
| 160.51 | 0.59 | 3.34 | -- | 0.0142 | -0.795 | -- | -- | 0.133 | 11.3 | 0.7569 | 1227 | -- | -- |
| 165.71 | 0.602 | 3.35 | -0.00205 | -- | -- | -- | -- | 0.0873 | -- | -- | -- | -- | -- |
| 165.68 | 0.602 | 3.35 | -- | 0.0257 | -- | -- | -- | 0.0872 | 7.55 | -- | -- | -- | -- |
| 160.22 | 0.59 | 3.34 | -- | -- | -0.794 | -- | -- | 0.13 | -- | 2 | 1227 | -- | -- |
| 165.71 | 0.601 | 3.35 | -- | -- | -- | -- | -- | 0.0876 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.05 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 2 | 145.05 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 4 | 14 |
| 5 | 145.14 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 4 | 14 |
| 17 | 145.83 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 4 | 17 |
| 23 | 145.98 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 4 | 19 |
| 24 | 145.98 | precipitation | 0.1 | 1440 | > th | dose dependent | sin | 1 | NA |
| 25 | 145.98 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 31 | 146.07 | precipitation | 0.1 | 1440 | > th | dose independent | sin | 0 | NA |
| 48 | 146.17 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 53 | 146.23 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 0 | NA |
| 54 | 146.23 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 56 | 146.32 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 4 | 16 |
| 74 | 146.54 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 2 | 18 |
| 80 | 146.57 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 84 | 146.57 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 22 | 21 |
| 86 | 146.60 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 23 | 21 |
| 96 | 146.64 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 99 | 146.64 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 122 | 146.73 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 12 | 20 |
| 124 | 146.73 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 12 | 20 |
| 127 | 146.74 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 128 | 146.74 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 131 | 146.74 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 216 | 146.90 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 248 | 146.98 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 275 | 147.02 | precipitation | 0.1 | 1440 | > th | dose independent | no | NA | NA |
| 276 | 147.02 | precipitation | 0.1 | 1440 | < th | dose independent | no | NA | NA |
| 281 | 147.02 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 283 | 147.02 | precipitation | 0.1 | 1440 | < th | dose dependent | no | NA | NA |
| 307 | 147.08 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 308 | 147.09 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 309 | 147.09 | precipitation | 0.1 | 1440 | > th | dose dependent | no | NA | NA |
| 310 | 147.09 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 331 | 147.14 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 332 | 147.14 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 341 | 147.18 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 20 |
| 371 | 147.24 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 378 | 147.27 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 381 | 147.27 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 383 | 147.30 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 396 | 147.35 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 406 | 147.39 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 426 | 147.48 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 428 | 147.48 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 436 | 147.49 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 475 | 147.67 | temperature | 15.0 | 90 | > th | dose independent | rect. | 11 | 23 |
| 522 | 147.92 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 23 |
| 639 | 148.69 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 662 | 148.92 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 732 | 149.41 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 733 | 149.41 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 745 | 149.46 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 778 | 149.59 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 788 | 149.65 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 804 | 149.73 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 806 | 149.74 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 810 | 149.76 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 9 |
| 812 | 149.77 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 829 | 149.84 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 848 | 149.94 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 9 |
| 853 | 149.96 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 8 | 17 |
| 854 | 149.97 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 8 | 14 |
| 855 | 149.98 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 9 | 8 |
| 859 | 150.00 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 862 | 150.00 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 9 |
| 887 | 150.19 | precipitation | 0.1 | 1440 | > th | dose independent | sin | 13 | NA |
| 891 | 150.20 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 14 | NA |
| 892 | 150.20 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 899 | 150.24 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 9 | 11 |
| 900 | 150.25 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 901 | 150.25 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 934 | 150.42 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 939 | 150.45 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 1 | 7 |
| 957 | 150.54 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 18 | 9 |
| 959 | 150.56 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 970 | 150.60 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 972 | 150.61 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 8 | 19 |
| 975 | 150.62 | precipitation | 0.1 | 1440 | > th | dose dependent | sin | 12 | NA |
| 987 | 150.69 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 11 | 3 |