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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0109000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NAC domain protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.98 (0.0683) R2 : 0.171
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.955 (0.173) R2dC : 0.056 R2C : 0.0514
β3 : 1.42 (0.181) R2dE : 0.141 R2E : 0.0961
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.432 (0.156) R2dN8 : 0.0225 R2N8 : -0.0277
σ : 1.25
deviance : 717.85
__
_____
C
peak time of C : 7.18
E
wheather : temperature
threshold : 23.8
memory length : 1618
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
705.1 1.25 4.07 -0.651 1.05 1.77 0.984 -3.95 -0.616 6.98 25.9 1584 -- --
709.81 1.24 3.97 0.502 0.949 1.29 0.971 -- -0.343 7.06 23.6 1744 -- --
707.57 1.24 4.08 -0.629 1.06 1.77 -- -3.96 -0.614 7.04 25.9 1592 -- --
711.78 1.24 3.96 0.499 0.975 1.34 -- -- -0.344 7.07 23.81 1636 -- --
754.58 1.28 4.1 -0.628 -- 1.76 -- -3.88 -0.625 -- 25.88 1408 -- --
782.79 1.31 3.83 1.04 0.947 -- 1.15 -- 0.229 6.95 -- -- -- --
786.17 1.31 3.83 1.06 0.95 -- -- -- 0.227 7.07 -- -- -- --
756.12 1.28 3.98 0.523 -- 1.34 -- -- -0.318 -- 23.97 1466 -- --
717.85 1.25 3.98 -- 0.955 1.42 -- -- -0.432 7.18 23.8 1618 -- --
833.68 1.35 3.85 1.08 -- -- -- -- 0.244 -- -- -- -- --
815.8 1.34 3.86 -- 0.961 -- -- -- 0.109 7 -- -- -- --
762.67 1.29 4 -- -- 1.46 -- -- -0.421 -- 24 1467 -- --
864.38 1.37 3.88 -- -- -- -- -- 0.124 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 678.06 radiation 1 14400 < th dose dependent rect. 2 3
5 682.71 humidity 60 43200 < th dose independent rect. 11 1
6 685.59 radiation 20 43200 < th dose independent rect. 8 1
12 687.50 radiation 20 43200 < th dose independent rect. 17 16
13 687.51 radiation 20 43200 < th dose independent rect. 22 11
14 687.51 radiation 20 43200 < th dose independent rect. 19 14
23 687.79 radiation 40 43200 < th dose independent rect. 10 1
39 688.45 radiation 20 43200 < th dose independent rect. 15 19
45 689.28 radiation 20 43200 > th dose independent rect. 8 1
48 689.43 radiation 20 43200 > th dose independent rect. 16 17
51 689.63 humidity 70 43200 < th dose dependent rect. 24 11
58 689.81 radiation 20 43200 > th dose independent rect. 6 3
73 689.84 radiation 20 43200 < th dose independent sin 11 NA
75 689.85 radiation 40 43200 < th dose independent rect. 16 19
76 689.88 radiation 40 43200 > th dose dependent rect. 10 1
78 689.91 radiation 40 43200 < th dose independent rect. 7 4
79 689.91 radiation 40 43200 < th dose independent rect. 5 6
84 689.93 radiation 40 43200 < th dose independent rect. 22 13
85 689.93 radiation 40 43200 < th dose independent rect. 19 16
97 690.10 wind 9 14400 > th dose dependent rect. 10 4
102 690.33 humidity 60 43200 > th dose independent rect. 21 15
108 690.53 radiation 20 43200 < th dose independent rect. 15 1
112 690.64 wind 3 43200 < th dose dependent rect. 9 1
115 690.73 wind 3 43200 < th dose independent rect. 9 1
118 690.85 radiation 40 43200 > th dose independent rect. 10 1
120 690.88 radiation 10 43200 > th dose dependent rect. 8 1
122 690.94 humidity 60 43200 > th dose independent rect. 10 2
130 691.18 wind 9 14400 > th dose dependent rect. 4 10
131 691.19 wind 9 14400 > th dose dependent rect. 6 8
152 691.34 humidity 60 43200 < th dose independent rect. 20 17
159 691.47 radiation 40 43200 > th dose dependent rect. 7 4
179 691.55 wind 5 14400 > th dose dependent rect. 4 11
184 691.63 radiation 20 43200 > th dose dependent rect. 16 18
207 691.90 radiation 1 43200 < th dose dependent rect. 21 8
231 692.01 wind 3 43200 > th dose independent rect. 9 1
242 692.09 wind 1 43200 < th dose dependent rect. 23 3
250 692.22 radiation 10 43200 > th dose dependent rect. 17 16
253 692.25 radiation 40 43200 < th dose independent sin 10 NA
259 692.35 humidity 80 43200 < th dose independent rect. 21 1
315 692.57 wind 7 14400 < th dose independent rect. 3 12
349 692.78 wind 9 14400 > th dose independent rect. 4 10
370 692.82 wind 5 14400 > th dose dependent rect. 8 7
389 692.89 radiation 20 43200 > th dose dependent sin 11 NA
413 692.99 wind 5 14400 > th dose dependent rect. 10 4
495 693.13 radiation 40 43200 < th dose independent rect. 9 23
508 693.24 radiation 20 43200 < th dose independent rect. 14 10
509 693.25 radiation 20 43200 < th dose independent rect. 14 5
561 693.33 radiation 40 43200 < th dose independent rect. 9 10
569 693.34 radiation 40 43200 < th dose independent rect. 9 8
599 693.42 wind 9 14400 > th dose independent rect. 23 15
607 693.47 wind 9 14400 > th dose independent rect. 7 7
611 693.48 wind 9 14400 > th dose independent rect. 9 5
627 693.54 wind 5 14400 > th dose dependent rect. 11 1
628 693.55 wind 9 14400 < th dose independent rect. 7 7
638 693.57 wind 9 14400 < th dose independent rect. 5 9
644 693.64 wind 7 14400 < th dose independent rect. 24 15
645 693.65 radiation 40 43200 > th dose independent rect. 7 4
677 693.78 radiation 40 43200 < th dose independent rect. 7 16
679 693.78 radiation 40 43200 < th dose independent rect. 5 18
682 693.79 radiation 40 43200 < th dose independent rect. 7 10
684 693.79 radiation 40 43200 < th dose independent rect. 5 12
728 693.80 radiation 40 43200 < th dose independent no NA NA
742 693.80 radiation 40 43200 < th dose independent rect. 22 19
760 693.80 radiation 40 43200 < th dose independent rect. 19 22
818 693.89 wind 9 14400 > th dose independent rect. 20 18