Os03g0107900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Exostosin-like family protein.
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Os03g0107900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Exostosin-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.05 | 0.205 | 10.3 | 0.507 | 0.154 | -0.477 | 0.261 | -0.116 | 0.13 | 2.74 | 32.1 | 2941 | -- | -- |
| 18.97 | 0.203 | 10.3 | 0.491 | 0.13 | -0.483 | 0.378 | -- | 0.126 | 3.88 | 114.1 | 2471 | -- | -- |
| 19.22 | 0.204 | 10.3 | 0.51 | 0.145 | -0.472 | -- | -0.123 | 0.135 | 2.03 | 36.45 | 2806 | -- | -- |
| 19.23 | 0.204 | 10.3 | 0.48 | 0.142 | -0.473 | -- | -- | 0.126 | 2.11 | 110.7 | 2748 | -- | -- |
| 20.27 | 0.21 | 10.3 | 0.5 | -- | -0.515 | -- | -0.101 | 0.127 | -- | 55.02 | 2589 | -- | -- |
| 23.53 | 0.227 | 10.2 | 0.677 | 0.185 | -- | 0.258 | -- | 0.224 | 2.59 | -- | -- | -- | -- |
| 23.73 | 0.228 | 10.2 | 0.671 | 0.185 | -- | -- | -- | 0.223 | 2.08 | -- | -- | -- | -- |
| 20.28 | 0.21 | 10.3 | 0.474 | -- | -0.516 | -- | -- | 0.121 | -- | 41.18 | 2585 | -- | -- |
| 23.67 | 0.227 | 10.3 | -- | 0.142 | -0.708 | -- | -- | 0.045 | 2.23 | 120.5 | 4114 | -- | -- |
| 25.77 | 0.237 | 10.2 | 0.679 | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
| 35.59 | 0.279 | 10.3 | -- | 0.197 | -- | -- | -- | 0.148 | 2.16 | -- | -- | -- | -- |
| 24.76 | 0.232 | 10.3 | -- | -- | -0.776 | -- | -- | 0.0377 | -- | 31.83 | 3889 | -- | -- |
| 37.92 | 0.287 | 10.3 | -- | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 3 | 18.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 17 |
| 6 | 18.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 8 | 19.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 21 |
| 13 | 19.06 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 16 |
| 46 | 19.12 | temperature | 25 | 4320 | < th | dose dependent | sin | 16 | NA |
| 65 | 19.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 20 |
| 115 | 19.19 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 125 | 19.20 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 134 | 19.21 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 135 | 19.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 149 | 19.22 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 161 | 19.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 168 | 19.22 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 21 |
| 175 | 19.23 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 213 | 19.23 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 216 | 19.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 238 | 19.24 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 252 | 19.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 291 | 19.26 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 347 | 19.27 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 16 |
| 368 | 19.28 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 369 | 19.28 | temperature | 20 | 1440 | > th | dose dependent | sin | 20 | NA |
| 401 | 19.29 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 436 | 19.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 453 | 19.30 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 14 |
| 461 | 19.30 | temperature | 10 | 4320 | > th | dose dependent | rect. | 14 | 16 |
| 481 | 19.31 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 489 | 19.31 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 495 | 19.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 11 |
| 506 | 19.31 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 14 |
| 524 | 19.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 18 |
| 544 | 19.32 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 723 | 19.34 | temperature | 10 | 4320 | > th | dose dependent | sin | 13 | NA |
| 729 | 19.34 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 732 | 19.34 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 753 | 19.34 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 11 |
| 857 | 19.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 928 | 19.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 14 |