FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0107700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to EL2 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.48 (0.0327) R2 : 0.534
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.36 (0.0771) R2dC : 0.313 R2C : 0.336
β3 : -1.34 (0.0993) R2dE : 0.207 R2E : 0.22
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0685 (0.0726) R2dN8 : 0.00166 R2N8 : -0.0103
σ : 0.605
deviance : 168.72
__
_____
C
peak time of C : 0.887
E
wheather : temperature
threshold : 23.46
memory length : 47520
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.22 0.606 8.41 1.04 1.34 -1.34 0.181 -0.198 0.217 1.19 23.16 512 -- --
166.26 0.601 8.41 1.02 1.34 -1.31 0.191 -- 0.216 1.17 23.17 511 -- --
166.33 0.601 8.41 1.04 1.34 -1.38 -- -0.28 0.222 1.18 23 502 -- --
166.41 0.601 8.41 1.01 1.35 -1.31 -- -- 0.213 1.18 23.16 503 -- --
258.69 0.749 8.44 0.858 -- -1.69 -- 0.113 0.0535 -- 26.69 916 -- --
187.64 0.642 8.37 1.33 1.37 -- 0.164 -- 0.419 0.871 -- -- -- --
187.75 0.642 8.37 1.33 1.37 -- -- -- 0.418 0.873 -- -- -- --
258.68 0.749 8.43 0.879 -- -1.69 -- -- 0.0635 -- 26.7 913 -- --
168.72 0.605 8.48 -- 1.36 -1.34 -- -- -0.0685 0.887 23.46 47520 -- --
305.24 0.816 8.35 1.38 -- -- -- -- 0.443 -- -- -- -- --
234.26 0.716 8.4 -- 1.39 -- -- -- 0.27 0.915 -- -- -- --
276.52 0.774 8.47 -- -- -2.07 -- -- -0.106 -- 26.7 924 -- --
355.4 0.88 8.38 -- -- -- -- -- 0.29 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.52 humidity 80.0 14400 > th dose dependent rect. 6 1
3 161.71 humidity 90.0 14400 < th dose independent rect. 6 1
7 162.28 humidity 80.0 14400 > th dose dependent rect. 5 3
9 162.41 humidity 90.0 14400 > th dose dependent rect. 5 10
10 162.48 precipitation 0.1 43200 < th dose independent rect. 24 8
11 162.48 precipitation 0.1 43200 < th dose dependent rect. 24 8
12 162.49 precipitation 0.1 43200 > th dose independent rect. 24 8
13 162.51 precipitation 0.1 43200 > th dose dependent rect. 24 8
19 162.66 radiation 10.0 4320 < th dose dependent rect. 18 12
21 162.70 precipitation 0.1 43200 > th dose dependent rect. 22 10
22 162.71 precipitation 0.1 43200 < th dose independent rect. 2 3
23 162.71 precipitation 0.1 43200 < th dose independent rect. 22 10
24 162.71 precipitation 0.1 43200 < th dose dependent rect. 2 3
25 162.71 precipitation 0.1 43200 < th dose dependent rect. 22 10
26 162.72 precipitation 0.1 43200 > th dose independent rect. 22 10
32 162.77 precipitation 0.1 43200 > th dose independent rect. 2 3
46 162.93 radiation 1.0 4320 > th dose dependent rect. 18 12
51 162.99 radiation 1.0 14400 > th dose independent rect. 6 2
61 163.11 radiation 1.0 14400 < th dose independent rect. 6 2
71 163.16 humidity 90.0 14400 > th dose independent rect. 6 1
76 163.22 humidity 80.0 14400 > th dose dependent rect. 3 6
91 163.49 precipitation 0.1 43200 > th dose dependent rect. 2 3
120 163.66 radiation 10.0 4320 > th dose dependent rect. 17 14
124 163.68 radiation 40.0 4320 < th dose dependent rect. 21 9
160 163.85 temperature 30.0 4320 > th dose dependent rect. 8 1
183 163.90 temperature 30.0 270 < th dose dependent rect. 20 15
192 163.99 radiation 1.0 14400 > th dose independent rect. 4 4
203 163.99 radiation 1.0 4320 > th dose dependent rect. 4 2
232 164.07 radiation 1.0 14400 < th dose independent rect. 24 8
236 164.07 radiation 1.0 14400 < th dose independent rect. 19 13
237 164.07 radiation 20.0 4320 < th dose dependent rect. 24 6
241 164.09 radiation 1.0 14400 < th dose independent rect. 4 4
259 164.13 radiation 10.0 4320 > th dose dependent rect. 6 1
270 164.16 radiation 10.0 4320 < th dose dependent rect. 4 2
321 164.28 temperature 25.0 720 < th dose dependent rect. 19 12
328 164.31 temperature 25.0 720 < th dose dependent rect. 20 10
329 164.32 radiation 1.0 4320 > th dose independent rect. 4 2
378 164.46 precipitation 0.1 43200 > th dose independent sin 6 NA
379 164.46 precipitation 0.1 43200 < th dose independent sin 6 NA
390 164.46 precipitation 0.1 43200 < th dose dependent sin 6 NA
397 164.47 precipitation 0.1 43200 > th dose dependent sin 6 NA
419 164.55 temperature 30.0 4320 > th dose independent rect. 8 1
421 164.55 radiation 1.0 4320 < th dose independent rect. 4 2
462 164.58 humidity 90.0 14400 > th dose dependent sin 2 NA
479 164.62 temperature 25.0 720 < th dose dependent sin 11 NA
522 164.71 radiation 1.0 14400 > th dose independent sin 7 NA
525 164.71 radiation 1.0 14400 < th dose independent rect. 19 17
566 164.79 radiation 1.0 14400 > th dose independent rect. 6 6
579 164.80 radiation 1.0 14400 < th dose independent sin 6 NA
650 164.88 radiation 1.0 14400 < th dose independent rect. 6 6
668 164.96 radiation 1.0 14400 > th dose independent rect. 4 12
690 164.99 wind 1.0 4320 < th dose dependent rect. 6 1
699 165.01 radiation 1.0 14400 < th dose independent rect. 24 16
703 165.01 radiation 1.0 14400 < th dose independent rect. 19 21
707 165.02 radiation 1.0 14400 < th dose independent rect. 4 12
733 165.05 precipitation 0.1 43200 < th dose independent rect. 7 1
736 165.05 precipitation 0.1 43200 < th dose dependent rect. 7 1
748 165.07 radiation 10.0 4320 < th dose dependent rect. 18 8
786 165.10 precipitation 0.1 43200 > th dose independent rect. 19 13
787 165.10 precipitation 0.1 43200 < th dose independent rect. 19 13
789 165.10 precipitation 0.1 43200 < th dose dependent rect. 19 13
852 165.19 precipitation 0.1 43200 > th dose independent rect. 7 1
888 165.25 precipitation 0.1 43200 > th dose dependent rect. 7 1
898 165.28 wind 7.0 43200 < th dose dependent rect. 8 1
900 165.29 humidity 90.0 14400 > th dose independent rect. 1 15
952 165.41 humidity 80.0 14400 > th dose dependent sin 7 NA
987 165.51 precipitation 0.1 43200 < th dose independent rect. 6 3
989 165.51 precipitation 0.1 43200 < th dose dependent rect. 6 3
998 165.53 radiation 10.0 4320 < th dose dependent rect. 18 2