Os03g0106100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os03g0106100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.29 | 0.544 | 3.21 | 0.684 | 0.081 | -0.433 | -0.379 | 6.25 | 0.298 | 2.56 | 30.81 | 4180 | -- | -- |
| 135.7 | 0.543 | 3.32 | -0.251 | 0.0873 | 0.329 | -0.337 | -- | 0.3 | 2.37 | 29.2 | 4249 | -- | -- |
| 134.73 | 0.541 | 3.2 | 0.717 | 0.0782 | -0.475 | -- | 6.51 | 0.295 | 1.22 | 31.2 | 4184 | -- | -- |
| 136.15 | 0.543 | 3.32 | -0.247 | 0.0858 | 0.324 | -- | -- | 0.296 | 1.9 | 29.1 | 4260 | -- | -- |
| 135.11 | 0.541 | 3.2 | 0.716 | -- | -0.452 | -- | 6.44 | 0.296 | -- | 31.3 | 4283 | -- | -- |
| 139.48 | 0.554 | 3.33 | -0.175 | 0.111 | -- | -0.304 | -- | 0.25 | 2.31 | -- | -- | -- | -- |
| 139.8 | 0.554 | 3.33 | -0.166 | 0.111 | -- | -- | -- | 0.252 | 1.75 | -- | -- | -- | -- |
| 136.58 | 0.544 | 3.32 | -0.248 | -- | 0.335 | -- | -- | 0.299 | -- | 29 | 4221 | -- | -- |
| 137.7 | 0.547 | 3.31 | -- | 0.0842 | 0.277 | -- | -- | 0.319 | 1.69 | 29.2 | 4272 | -- | -- |
| 140.55 | 0.554 | 3.33 | -0.162 | -- | -- | -- | -- | 0.255 | -- | -- | -- | -- | -- |
| 140.53 | 0.555 | 3.32 | -- | 0.107 | -- | -- | -- | 0.271 | 1.7 | -- | -- | -- | -- |
| 138.12 | 0.547 | 3.31 | -- | -- | 0.289 | -- | -- | 0.322 | -- | 29.2 | 4243 | -- | -- |
| 141.24 | 0.555 | 3.32 | -- | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.59 | radiation | 10 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 2 | 127.59 | radiation | 30 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 16 | 127.59 | radiation | 10 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 33 | 128.03 | radiation | 30 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 65 | 128.06 | humidity | 70 | 90 | < th | dose independent | rect. | 19 | 14 |
| 66 | 128.10 | radiation | 30 | 90 | > th | dose independent | rect. | 7 | 1 |
| 82 | 128.18 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 83 | 128.27 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 84 | 128.29 | humidity | 70 | 90 | < th | dose independent | rect. | 6 | 3 |
| 128 | 128.40 | radiation | 30 | 10 | > th | dose independent | rect. | 7 | 1 |
| 147 | 128.49 | radiation | 30 | 10 | > th | dose independent | rect. | 15 | 18 |
| 164 | 128.55 | radiation | 20 | 10 | < th | dose independent | sin | 11 | NA |
| 261 | 128.74 | humidity | 80 | 90 | < th | dose dependent | rect. | 23 | 10 |
| 265 | 128.78 | humidity | 90 | 30 | < th | dose dependent | rect. | 24 | 8 |
| 273 | 128.95 | humidity | 80 | 10 | < th | dose dependent | rect. | 22 | 10 |
| 287 | 129.03 | humidity | 70 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 314 | 129.09 | humidity | 80 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 317 | 129.10 | radiation | 20 | 10 | > th | dose independent | sin | 11 | NA |
| 318 | 129.10 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 326 | 129.13 | humidity | 80 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 366 | 129.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 414 | 129.28 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 592 | 129.43 | humidity | 70 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 594 | 129.47 | radiation | 10 | 10 | > th | dose dependent | sin | 11 | NA |
| 595 | 129.48 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 597 | 129.50 | humidity | 70 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 626 | 129.61 | radiation | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 651 | 129.72 | humidity | 70 | 1440 | < th | dose independent | rect. | 7 | 1 |