Os03g0105300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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Os03g0105300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.68 | 0.252 | 9.44 | 0.818 | 0.242 | 0.446 | -0.136 | 1.65 | 0.196 | 10.3 | 22.19 | 10 | -- | -- |
| 29.7 | 0.256 | 9.46 | 0.57 | 0.239 | 0.587 | 0.17 | -- | 0.171 | 10.5 | 25.5 | 19 | -- | -- |
| 28.72 | 0.25 | 9.44 | 0.8 | 0.248 | 0.448 | -- | 1.58 | 0.196 | 10.4 | 22.6 | 9 | -- | -- |
| 29.69 | 0.254 | 9.46 | 0.569 | 0.246 | 0.626 | -- | -- | 0.17 | 9.94 | 25.6 | 18 | -- | -- |
| 31.92 | 0.265 | 9.45 | 0.744 | -- | 0.597 | -- | 1.35 | 0.16 | -- | 21.32 | 9 | -- | -- |
| 34.66 | 0.276 | 9.45 | 0.645 | 0.376 | -- | 0.467 | -- | 0.204 | 12.7 | -- | -- | -- | -- |
| 35.53 | 0.279 | 9.45 | 0.662 | 0.375 | -- | -- | -- | 0.205 | 12.4 | -- | -- | -- | -- |
| 32.99 | 0.269 | 9.46 | 0.558 | -- | 0.706 | -- | -- | 0.168 | -- | 25.6 | 18 | -- | -- |
| 37.88 | 0.287 | 9.48 | -- | 0.248 | 0.762 | -- | -- | 0.0769 | 8.87 | 24.94 | 19 | -- | -- |
| 44.38 | 0.311 | 9.46 | 0.649 | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
| 47.07 | 0.321 | 9.46 | -- | 0.366 | -- | -- | -- | 0.132 | 12.3 | -- | -- | -- | -- |
| 39.24 | 0.292 | 9.5 | -- | -- | 1.03 | -- | -- | 0.00993 | -- | 13.97 | 2 | -- | -- |
| 55.5 | 0.348 | 9.47 | -- | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 18 |
| 4 | 27.86 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 5 | 27.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 6 | 27.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 9 | 27.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 10 | 27.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 34 | 28.12 | temperature | 15 | 720 | > th | dose dependent | sin | 4 | NA |
| 44 | 28.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 98 | 28.31 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 132 | 28.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 188 | 28.49 | temperature | 30 | 270 | < th | dose independent | sin | 9 | NA |
| 203 | 28.51 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 6 |
| 237 | 28.57 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |
| 242 | 28.58 | temperature | 30 | 270 | < th | dose independent | sin | 5 | NA |
| 285 | 28.66 | temperature | 30 | 270 | < th | dose independent | rect. | 21 | 22 |
| 362 | 28.78 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 16 |
| 370 | 28.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 430 | 28.88 | temperature | 20 | 90 | > th | dose dependent | sin | 1 | NA |
| 450 | 28.91 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 18 |
| 478 | 28.94 | temperature | 20 | 10 | > th | dose dependent | sin | 0 | NA |
| 480 | 28.94 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 492 | 28.94 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 495 | 28.95 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 561 | 28.99 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 562 | 28.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 582 | 29.01 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 589 | 29.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 590 | 29.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 627 | 29.04 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 628 | 29.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 631 | 29.04 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 21 |
| 643 | 29.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 673 | 29.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 691 | 29.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 693 | 29.07 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 10 |
| 706 | 29.07 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 735 | 29.10 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
| 760 | 29.11 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 773 | 29.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 832 | 29.16 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 835 | 29.16 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 855 | 29.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 932 | 29.23 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |