Os03g0104400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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Os03g0104400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.05 | 0.163 | 10 | 0.987 | 0.174 | -0.371 | 0.445 | 1.19 | 0.266 | 15.7 | 26.1 | 1381 | -- | -- |
| 13.11 | 0.169 | 10.1 | 0.667 | 0.187 | -0.273 | 0.317 | -- | 0.17 | 15.1 | 22.9 | 4786 | -- | -- |
| 12.55 | 0.165 | 10 | 0.958 | 0.168 | -0.373 | -- | 1.07 | 0.253 | 16.2 | 26.4 | 1301 | -- | -- |
| 13.51 | 0.171 | 10.1 | 0.687 | 0.195 | -0.278 | -- | -- | 0.172 | 15.8 | 23 | 4828 | -- | -- |
| 14.05 | 0.175 | 10 | 0.991 | -- | -0.388 | -- | 1.14 | 0.259 | -- | 26.4 | 1288 | -- | -- |
| 15.58 | 0.185 | 10.1 | 0.535 | 0.203 | -- | 0.4 | -- | 0.0631 | 15.6 | -- | -- | -- | -- |
| 16.07 | 0.188 | 10.1 | 0.542 | 0.205 | -- | -- | -- | 0.0654 | 15.6 | -- | -- | -- | -- |
| 15 | 0.18 | 10.1 | 0.641 | -- | -0.276 | -- | -- | 0.171 | -- | 24.2 | 1095 | -- | -- |
| 23.52 | 0.227 | 10.1 | -- | 0.211 | -0.0625 | -- | -- | 0.028 | 15.4 | 23.6 | 4666 | -- | -- |
| 18.41 | 0.2 | 10.1 | 0.534 | -- | -- | -- | -- | 0.06 | -- | -- | -- | -- | -- |
| 23.82 | 0.228 | 10.1 | -- | 0.195 | -- | -- | -- | 0.00504 | 15.7 | -- | -- | -- | -- |
| 24.9 | 0.232 | 10.1 | -- | -- | -0.172 | -- | -- | 0.0553 | -- | 25.07 | 1187 | -- | -- |
| 25.92 | 0.238 | 10.1 | -- | -- | -- | -- | -- | 0.000762 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 4 | 11.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 24 | 11.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 73 | 11.90 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 82 | 11.93 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 104 | 11.99 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 143 | 12.03 | humidity | 90 | 43200 | > th | dose dependent | sin | 9 | NA |
| 145 | 12.03 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 5 |
| 171 | 12.05 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 181 | 12.06 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 182 | 12.06 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 195 | 12.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 211 | 12.08 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 213 | 12.08 | radiation | 20 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 225 | 12.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 255 | 12.11 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 256 | 12.11 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 264 | 12.11 | radiation | 40 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 325 | 12.14 | humidity | 60 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 345 | 12.14 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 364 | 12.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 374 | 12.16 | humidity | 60 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 410 | 12.18 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 429 | 12.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 430 | 12.18 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 491 | 12.20 | humidity | 90 | 43200 | > th | dose independent | sin | 9 | NA |
| 494 | 12.20 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 495 | 12.20 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 584 | 12.22 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 585 | 12.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 599 | 12.22 | radiation | 10 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 610 | 12.22 | radiation | 40 | 43200 | > th | dose dependent | rect. | 15 | 19 |
| 623 | 12.23 | radiation | 40 | 43200 | < th | dose independent | sin | 11 | NA |
| 640 | 12.23 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 697 | 12.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 19 |
| 726 | 12.24 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 727 | 12.24 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 738 | 12.24 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 739 | 12.24 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 785 | 12.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 825 | 12.25 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 826 | 12.25 | radiation | 40 | 43200 | > th | dose dependent | sin | 11 | NA |
| 827 | 12.25 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 851 | 12.26 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 861 | 12.27 | humidity | 90 | 43200 | < th | dose independent | sin | 14 | NA |
| 885 | 12.27 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 899 | 12.28 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 904 | 12.28 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 908 | 12.28 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 924 | 12.28 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 945 | 12.28 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 964 | 12.29 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 965 | 12.29 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 974 | 12.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 979 | 12.29 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 996 | 12.29 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 1 |