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Os03g0104100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein phosphatase 2C-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0215) R2 : 0.0036
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0581 (0.0453) R2dN8 : 0.00465 R2N8 : 0.0036
σ : 0.405
deviance : 75.37
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.53 0.327 10.6 0.344 0.3 -0.522 -0.524 -0.153 0.0905 22 26.4 277 -- --
48.36 0.324 10.6 0.373 0.258 -0.521 -0.524 -- 0.0663 22.1 26.75 241 -- --
49.37 0.327 10.6 0.396 0.277 -0.555 -- -0.0302 0.0738 21.6 27 263 -- --
49.37 0.327 10.6 0.4 0.28 -0.557 -- -- 0.0721 21.6 26.93 262 -- --
52.05 0.336 10.6 0.424 -- -0.526 -- 0.117 0.0716 -- 26.97 153 -- --
61.02 0.366 10.6 0.24 0.444 -- -0.37 -- -0.0406 1.87 -- -- -- --
61.53 0.367 10.6 0.251 0.445 -- -- -- -0.0387 2.02 -- -- -- --
52.02 0.336 10.6 0.4 -- -0.515 -- -- 0.0608 -- 26.9 145 -- --
53.4 0.34 10.6 -- 0.273 -0.49 -- -- 0.0162 22.4 27 263 -- --
73.46 0.4 10.6 0.269 -- -- -- -- -0.0283 -- -- -- -- --
63.19 0.372 10.6 -- 0.45 -- -- -- -0.0666 2.03 -- -- -- --
56.16 0.349 10.6 -- -- -0.483 -- -- 0.00967 -- 26.92 145 -- --
75.37 0.405 10.6 -- -- -- -- -- -0.0581 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.11 temperature 30 270 < th dose dependent rect. 23 21
3 46.34 temperature 30 720 < th dose dependent rect. 24 18
12 46.85 temperature 25 720 < th dose dependent rect. 4 15
25 47.15 temperature 30 720 < th dose dependent sin 3 NA
35 47.25 temperature 25 720 < th dose dependent sin 1 NA
40 47.31 temperature 20 720 > th dose dependent rect. 23 16
41 47.32 temperature 10 720 > th dose dependent rect. 23 16
50 47.42 temperature 20 720 > th dose dependent rect. 1 14
62 47.53 temperature 10 720 > th dose dependent rect. 1 14
83 47.73 temperature 20 720 > th dose dependent sin 5 NA
92 47.78 temperature 10 720 > th dose dependent sin 5 NA
144 48.13 temperature 10 720 > th dose dependent rect. 3 10
174 48.29 temperature 15 720 > th dose dependent rect. 1 18
190 48.37 temperature 15 720 > th dose dependent rect. 23 20
207 48.42 temperature 10 720 > th dose dependent rect. 3 8
210 48.43 temperature 25 270 > th dose independent rect. 7 13
235 48.53 temperature 20 270 > th dose dependent rect. 16 22
245 48.59 temperature 25 270 > th dose independent rect. 1 20
254 48.62 temperature 20 10 > th dose dependent rect. 3 21
286 48.71 temperature 10 270 > th dose dependent rect. 15 23
300 48.74 temperature 30 270 < th dose dependent rect. 9 10
344 48.83 temperature 30 10 < th dose dependent rect. 24 23
353 48.86 temperature 25 270 < th dose independent rect. 7 12
377 48.91 temperature 30 270 < th dose dependent rect. 8 23
378 48.92 temperature 25 720 > th dose independent rect. 7 8
388 48.94 temperature 30 270 < th dose dependent no NA NA
390 48.94 temperature 20 270 > th dose dependent rect. 4 18
409 48.99 temperature 20 10 > th dose dependent rect. 1 23
410 48.99 temperature 10 270 > th dose dependent rect. 1 23
430 49.04 temperature 25 1440 < th dose dependent rect. 13 14
444 49.07 temperature 20 270 > th dose dependent rect. 6 16
460 49.09 temperature 25 1440 < th dose dependent sin 16 NA
473 49.11 temperature 25 720 < th dose independent rect. 7 6
485 49.14 temperature 25 1440 < th dose dependent rect. 17 5
495 49.16 temperature 25 720 < th dose independent rect. 6 9
515 49.18 temperature 20 10 > th dose dependent rect. 3 23
553 49.24 temperature 30 10 < th dose dependent sin 22 NA
579 49.28 temperature 25 270 < th dose independent sin 0 NA
598 49.30 temperature 20 10 > th dose dependent rect. 8 16
603 49.30 temperature 10 10 > th dose dependent rect. 3 23
643 49.36 temperature 25 720 < th dose independent sin 2 NA
649 49.36 temperature 30 720 < th dose dependent rect. 13 23
650 49.36 temperature 30 720 < th dose dependent rect. 17 23
679 49.40 temperature 30 720 < th dose dependent rect. 15 23
702 49.44 temperature 25 1440 < th dose dependent rect. 21 1
709 49.44 temperature 10 720 > th dose dependent rect. 12 23
724 49.47 temperature 25 720 > th dose independent sin 2 NA
725 49.47 temperature 25 720 > th dose independent rect. 3 12
746 49.50 temperature 25 270 < th dose independent rect. 24 21
766 49.52 temperature 25 270 > th dose independent sin 0 NA
777 49.52 temperature 20 10 > th dose dependent rect. 23 23
802 49.55 temperature 25 1440 < th dose dependent rect. 17 1
857 49.61 temperature 20 1440 > th dose dependent rect. 1 3
908 49.66 temperature 15 720 > th dose dependent no NA NA
956 49.71 temperature 30 30 < th dose dependent rect. 9 23
969 49.72 temperature 20 10 > th dose dependent rect. 21 23