Os03g0103000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os03g0103000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 197.58 | 0.66 | 3.16 | -0.863 | 0.193 | 30.4 | -0.86 | -105 | -0.154 | 4.56 | 0.0841 | 264 | 1.99 | 2.01 |
| 259.66 | 0.756 | 3.03 | -0.438 | 0.348 | 0.0233 | -1.8 | -- | -0.239 | 4.91 | -0.0008324 | 3 | 5.28 | 6.24 |
| 199.42 | 0.658 | 3.15 | -0.848 | 0.188 | 30.3 | -- | -105 | -0.147 | 4.05 | 0.09324 | 265 | 2 | 2 |
| 258.52 | 0.749 | 3.03 | -0.406 | 0.321 | 3.09 | -- | -- | -0.215 | 4.51 | 0.004087 | 3 | 4.34 | 4.5 |
| 201.25 | 0.661 | 3.15 | -0.834 | -- | 30.4 | -- | -105 | -0.147 | -- | 0.08981 | 263 | 1.99 | 1.98 |
| 259.69 | 0.755 | 3.03 | -0.438 | 0.361 | -- | -1.8 | -- | -0.237 | 4.96 | -- | -- | -- | -- |
| 267.97 | 0.767 | 3.03 | -0.434 | 0.349 | -- | -- | -- | -0.228 | 4.62 | -- | -- | -- | -- |
| 261.4 | 0.753 | 3.03 | -0.381 | -- | 3.24 | -- | -- | -0.198 | -- | -0.008232 | 3 | 4.35 | 4.55 |
| 262.85 | 0.755 | 3.02 | -- | 0.313 | 3.19 | -- | -- | -0.17 | 4.54 | 0.1278 | 4 | 4.36 | 4.59 |
| 274.45 | 0.774 | 3.03 | -0.421 | -- | -- | -- | -- | -0.219 | -- | -- | -- | -- | -- |
| 272.93 | 0.773 | 3.02 | -- | 0.341 | -- | -- | -- | -0.18 | 4.65 | -- | -- | -- | -- |
| 265.61 | 0.759 | 3.02 | -- | -- | 3.39 | -- | -- | -0.18 | -- | -0.007556 | 3 | 4.3 | 4.65 |
| 279.11 | 0.78 | 3.02 | -- | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 198.19 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 2 | 198.20 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 11 | 215.09 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 12 | 215.09 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 13 | 218.91 | wind | 1.0 | 10 | < th | dose independent | rect. | 3 | 7 |
| 17 | 219.56 | humidity | 60.0 | 30 | < th | dose dependent | rect. | 17 | 17 |
| 19 | 219.80 | humidity | 60.0 | 30 | < th | dose independent | rect. | 17 | 17 |
| 30 | 220.07 | wind | 1.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 35 | 220.19 | humidity | 60.0 | 90 | < th | dose independent | rect. | 18 | 15 |
| 36 | 220.20 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 39 | 220.30 | wind | 1.0 | 10 | < th | dose independent | sin | 23 | NA |
| 40 | 220.33 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 47 | 220.39 | humidity | 60.0 | 10 | < th | dose independent | rect. | 10 | 1 |
| 49 | 220.39 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 142 | 220.42 | humidity | 60.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 169 | 220.42 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 271 | 220.56 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 3 |
| 290 | 220.64 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 292 | 220.64 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 9 |
| 296 | 220.65 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 312 | 220.73 | wind | 1.0 | 10 | < th | dose independent | rect. | 3 | 15 |
| 329 | 220.77 | wind | 1.0 | 10 | < th | dose independent | rect. | 3 | 13 |
| 367 | 221.23 | wind | 1.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 369 | 221.26 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 370 | 221.27 | wind | 1.0 | 10 | > th | dose independent | sin | 23 | NA |
| 373 | 221.31 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 379 | 221.58 | wind | 1.0 | 10 | < th | dose independent | rect. | 9 | 9 |
| 384 | 221.62 | wind | 1.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 404 | 221.74 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 424 | 221.80 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 606 | 223.21 | wind | 1.0 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 609 | 223.29 | wind | 1.0 | 10 | < th | dose dependent | rect. | 3 | 7 |
| 647 | 224.25 | wind | 1.0 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 651 | 224.27 | wind | 1.0 | 10 | < th | dose dependent | rect. | 3 | 13 |
| 673 | 224.72 | radiation | 40.0 | 10 | > th | dose dependent | sin | 12 | NA |
| 676 | 224.89 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 769 | 227.40 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 865 | 228.40 | precipitation | 0.1 | 30 | < th | dose independent | sin | 3 | NA |
| 866 | 228.40 | precipitation | 0.1 | 30 | < th | dose dependent | sin | 3 | NA |
| 871 | 228.48 | precipitation | 0.1 | 30 | > th | dose independent | sin | 3 | NA |
| 872 | 228.49 | precipitation | 0.1 | 30 | > th | dose dependent | sin | 3 | NA |
| 913 | 229.36 | radiation | 40.0 | 10 | > th | dose independent | rect. | 9 | 1 |