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Os03g0102000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.3 (0.0324) R2 : 0.768
β1 : -1.12 (0.138) R2dD : 0.0488 R2D : 0.0308
β2 : 2.34 (0.0792) R2dC : 0.45 R2C : 0.388
β3 : -1.24 (0.158) R2dE : 0.0496 R2E : 0.11
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.23 (0.0738) R2dN8 : 0.224 R2N8 : 0.178
σ : 0.592
deviance : 161.57
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C
peak time of C : 8.7
E
wheather : temperature
threshold : 18.7
memory length : 2756
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.47 0.58 14.3 -1.15 2.3 -0.699 1.98 1.22 -1.18 8.57 21.3 1165 -- --
155.56 0.581 14.3 -1.22 2.32 -0.902 1.85 -- -1.28 8.57 20 2656 -- --
163.4 0.595 14.3 -1.09 2.33 -0.709 -- 1.33 -1.21 8.7 20.6 1291 -- --
161.57 0.592 14.3 -1.12 2.34 -1.24 -- -- -1.23 8.7 18.7 2756 -- --
448.5 0.986 14.3 -0.995 -- -1.03 -- 1.52 -1 -- 26.2 2069 -- --
174.78 0.62 14.4 -1.76 2.34 -- 1.76 -- -1.46 8.68 -- -- -- --
184.78 0.637 14.4 -1.7 2.33 -- -- -- -1.46 8.77 -- -- -- --
367.33 0.893 14.3 -1.22 -- -1.59 -- -- -1 -- 26.22 611 -- --
175.77 0.617 14.2 -- 2.33 -1.57 -- -- -0.974 8.74 16.41 47520 -- --
493.65 1.04 14.4 -1.7 -- -- -- -- -1.44 -- -- -- -- --
261.15 0.756 14.3 -- 2.33 -- -- -- -1.27 8.82 -- -- -- --
404.36 0.937 14.3 -- -- -1.8 -- -- -0.82 -- 26.3 640 -- --
569.81 1.11 14.4 -- -- -- -- -- -1.25 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 144.20 temperature 10.0 270 > th dose dependent rect. 12 17
2 144.32 temperature 15.0 270 > th dose independent rect. 12 17
6 145.67 radiation 1.0 270 > th dose independent rect. 4 8
17 145.86 radiation 10.0 270 < th dose dependent rect. 22 10
18 145.89 radiation 20.0 10 < th dose dependent sin 5 NA
20 145.94 temperature 30.0 270 < th dose dependent rect. 7 15
22 146.11 radiation 20.0 90 < th dose dependent sin 6 NA
24 146.22 radiation 10.0 270 < th dose dependent sin 8 NA
26 146.32 temperature 15.0 270 > th dose independent rect. 22 9
30 146.36 atmosphere 1000.0 270 > th dose independent rect. 22 9
38 146.78 precipitation 0.1 270 < th dose independent rect. 5 7
39 146.78 precipitation 0.1 270 < th dose dependent rect. 5 7
40 146.83 temperature 30.0 270 < th dose independent rect. 6 17
43 146.92 temperature 10.0 270 > th dose independent rect. 5 7
44 146.92 atmosphere 995.0 270 > th dose independent rect. 5 7
45 146.92 atmosphere 1015.0 270 < th dose independent rect. 5 7
49 146.98 humidity 50.0 270 > th dose independent rect. 5 7
50 147.01 wind 9.0 270 < th dose independent rect. 12 17
62 147.32 radiation 1.0 10 > th dose dependent rect. 6 6
64 147.36 wind 9.0 270 < th dose independent rect. 5 7
78 147.39 radiation 10.0 30 > th dose independent rect. 7 5
83 147.49 radiation 10.0 270 < th dose independent rect. 22 10
130 147.99 temperature 10.0 270 > th dose dependent rect. 10 8
131 148.00 radiation 1.0 270 > th dose independent sin 6 NA
144 148.15 atmosphere 1000.0 90 > th dose independent rect. 12 19
149 148.22 temperature 15.0 10 > th dose dependent rect. 12 10
151 148.28 precipitation 0.1 270 < th dose independent rect. 12 17
153 148.28 radiation 10.0 270 < th dose dependent rect. 23 16
154 148.28 precipitation 0.1 270 < th dose dependent rect. 12 17
164 148.42 radiation 30.0 30 < th dose dependent rect. 1 10
201 148.61 temperature 30.0 270 < th dose independent rect. 5 20
203 148.62 radiation 1.0 270 < th dose independent sin 7 NA
207 148.64 temperature 15.0 10 > th dose dependent rect. 12 8
236 148.87 wind 1.0 90 > th dose independent rect. 7 5
244 148.90 temperature 30.0 270 < th dose independent rect. 22 9
245 148.90 humidity 50.0 270 > th dose independent rect. 22 9
248 148.90 radiation 20.0 30 < th dose independent rect. 1 9
251 148.90 temperature 10.0 270 > th dose independent rect. 7 15
262 148.97 temperature 30.0 270 < th dose independent rect. 5 7
264 148.98 wind 9.0 270 < th dose independent rect. 22 9
325 149.33 atmosphere 1015.0 270 < th dose independent rect. 7 15
331 149.36 precipitation 0.1 270 < th dose independent rect. 7 15
332 149.36 precipitation 0.1 270 < th dose dependent rect. 7 15
339 149.42 temperature 30.0 270 < th dose dependent sin 21 NA
354 149.56 wind 1.0 270 > th dose independent rect. 7 15
368 149.67 temperature 30.0 720 < th dose dependent rect. 24 18
394 149.90 radiation 40.0 90 < th dose independent rect. 12 18
417 150.01 temperature 30.0 10 < th dose independent rect. 8 17
426 150.06 wind 9.0 270 < th dose independent rect. 7 15
431 150.09 temperature 10.0 10 > th dose dependent rect. 14 17
479 150.30 temperature 25.0 270 > th dose independent rect. 10 8
502 150.34 atmosphere 995.0 270 > th dose independent rect. 7 15
514 150.37 humidity 50.0 270 > th dose dependent rect. 22 9
528 150.40 temperature 10.0 1440 > th dose independent rect. 8 5
531 150.40 atmosphere 995.0 1440 > th dose independent rect. 8 5
532 150.40 temperature 10.0 1440 > th dose independent rect. 13 19
563 150.51 radiation 20.0 4320 < th dose dependent rect. 19 10
582 150.57 temperature 30.0 10 < th dose independent rect. 10 15
586 150.57 precipitation 0.1 270 < th dose independent rect. 18 17
590 150.57 precipitation 0.1 270 < th dose dependent rect. 18 17
594 150.59 atmosphere 1000.0 10 > th dose independent rect. 1 7
597 150.61 precipitation 0.1 270 < th dose independent rect. 22 9
599 150.61 precipitation 0.1 270 < th dose dependent rect. 22 9
625 150.66 atmosphere 1010.0 270 < th dose independent rect. 23 8
629 150.67 temperature 15.0 10 > th dose independent rect. 14 17
652 150.74 temperature 30.0 720 < th dose dependent sin 2 NA
672 150.84 humidity 70.0 30 > th dose dependent rect. 1 10
705 150.95 wind 7.0 270 < th dose independent rect. 11 7
742 151.07 radiation 10.0 90 < th dose independent rect. 1 16
745 151.08 humidity 80.0 43200 < th dose independent rect. 6 1
776 151.10 humidity 80.0 43200 > th dose independent rect. 6 1
785 151.12 atmosphere 1010.0 270 < th dose independent rect. 11 7
794 151.16 radiation 1.0 270 < th dose independent rect. 23 16
820 151.27 humidity 50.0 270 > th dose independent rect. 12 17
823 151.28 radiation 1.0 4320 < th dose independent rect. 19 10
834 151.31 wind 1.0 270 > th dose independent rect. 12 17
841 151.33 radiation 20.0 10 < th dose independent rect. 1 7
851 151.34 humidity 80.0 30 > th dose independent rect. 1 9
899 151.52 wind 1.0 30 > th dose independent rect. 8 17
917 151.60 radiation 20.0 90 < th dose independent sin 8 NA
968 151.70 radiation 1.0 270 > th dose independent rect. 11 8
980 151.71 temperature 15.0 1440 > th dose independent rect. 13 8
997 151.75 wind 1.0 10 > th dose independent rect. 7 7