Os03g0101400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0101400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 192.21 | 0.651 | 3.43 | -0.578 | 0.561 | -0.755 | 0.924 | -0.874 | -0.0195 | 18.2 | 23.6 | 434 | -- | -- |
| 191.54 | 0.65 | 3.4 | -0.455 | 0.502 | -0.911 | 0.69 | -- | 0.0385 | 16.2 | 23.5 | 402 | -- | -- |
| 191.68 | 0.65 | 3.38 | -0.262 | 0.509 | -0.987 | -- | 1.3 | 0.0983 | 16.1 | 23.41 | 292 | -- | -- |
| 192.65 | 0.651 | 3.4 | -0.447 | 0.491 | -0.88 | -- | -- | 0.0441 | 16.2 | 23.21 | 266 | -- | -- |
| 200.99 | 0.664 | 3.39 | -0.406 | -- | -0.551 | -- | 0.819 | 0.0192 | -- | 22.7 | 10 | -- | -- |
| 204.8 | 0.671 | 3.43 | -0.604 | 0.207 | -- | 0.383 | -- | -0.0845 | 18.4 | -- | -- | -- | -- |
| 205.15 | 0.671 | 3.43 | -0.61 | 0.209 | -- | -- | -- | -0.0835 | 18.7 | -- | -- | -- | -- |
| 201.47 | 0.664 | 3.41 | -0.529 | -- | -0.489 | -- | -- | -0.0177 | -- | 22.7 | 33 | -- | -- |
| 197.48 | 0.655 | 3.39 | -- | 0.548 | -1.01 | -- | -- | 0.107 | 16.2 | 22.91 | 34 | -- | -- |
| 207.43 | 0.673 | 3.42 | -0.615 | -- | -- | -- | -- | -0.0877 | -- | -- | -- | -- | -- |
| 214.96 | 0.686 | 3.41 | -- | 0.217 | -- | -- | -- | -0.0156 | 18.6 | -- | -- | -- | -- |
| 208.59 | 0.675 | 3.39 | -- | -- | -0.586 | -- | -- | 0.0546 | -- | 22.5 | 30 | -- | -- |
| 217.4 | 0.688 | 3.41 | -- | -- | -- | -- | -- | -0.0195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 188.74 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 2 | 188.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 5 | 189.02 | wind | 7 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 8 | 189.03 | wind | 7 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 11 | 189.46 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 20 |
| 26 | 189.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 29 | 189.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 13 |
| 38 | 190.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 41 | 190.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 42 | 190.17 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 45 | 190.18 | wind | 1 | 270 | < th | dose dependent | rect. | 1 | 2 |
| 47 | 190.26 | temperature | 10 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 65 | 190.46 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 143 | 191.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 6 |
| 145 | 191.14 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 19 |
| 156 | 191.23 | humidity | 60 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 169 | 191.24 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 178 | 191.29 | radiation | 30 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 194 | 191.37 | temperature | 25 | 10 | > th | dose independent | rect. | 2 | 21 |
| 196 | 191.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 199 | 191.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 209 | 191.45 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 213 | 191.46 | humidity | 60 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 227 | 191.46 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 6 |
| 228 | 191.47 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 244 | 191.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 254 | 191.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 256 | 191.56 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 14 |
| 258 | 191.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 261 | 191.60 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 267 | 191.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 273 | 191.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 9 |
| 277 | 191.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 295 | 191.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 318 | 191.71 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 360 | 191.83 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 380 | 191.88 | radiation | 20 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 386 | 191.90 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 19 |
| 397 | 191.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 402 | 191.94 | radiation | 40 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 410 | 191.96 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 422 | 191.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 429 | 191.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 1 |
| 437 | 192.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 17 |
| 439 | 192.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 19 | 11 |
| 494 | 192.13 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 556 | 192.22 | radiation | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 564 | 192.23 | radiation | 40 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 606 | 192.30 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 612 | 192.31 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 623 | 192.32 | radiation | 30 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 625 | 192.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 642 | 192.35 | radiation | 20 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 676 | 192.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 700 | 192.42 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 702 | 192.43 | radiation | 40 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 719 | 192.46 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 723 | 192.46 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 732 | 192.47 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 753 | 192.49 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 754 | 192.49 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 764 | 192.50 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 785 | 192.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 799 | 192.53 | radiation | 30 | 1440 | < th | dose independent | rect. | 12 | 21 |
| 824 | 192.54 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 7 |
| 825 | 192.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 11 |
| 921 | 192.64 | humidity | 60 | 90 | < th | dose independent | rect. | 16 | 18 |