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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0101200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.22 (0.0409) R2 : 0.207
β1 : -1.38 (0.15) R2dD : 0.153 R2D : 0.119
β2 : 0.602 (0.104) R2dC : 0.0589 R2C : 0.0453
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.323 (0.0874) R2dN8 : 0.0318 R2N8 : -0.000786
σ : 0.769
deviance : 269.9
__
_____
C
peak time of C : 3.79
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
242.56 0.732 5.12 -0.69 0.529 0.26 1.93 -3.92 -0.111 2.92 23.4 216 -- --
254.84 0.744 5.21 -1.01 0.601 1.58 1.37 -- -0.227 3.55 19.65 245 -- --
250.1 0.737 5.13 -0.856 0.591 0.202 -- -3.37 -0.153 3.56 22.15 461 -- --
256.42 0.746 5.2 -1.15 0.58 1.78 -- -- -0.257 3.85 18.8 224 -- --
268.4 0.763 5.14 -0.829 -- 0.448 -- -3.17 -0.137 -- 23 309 -- --
267.73 0.767 5.21 -1.36 0.587 -- 0.882 -- -0.317 3.33 -- -- -- --
269.9 0.769 5.22 -1.38 0.602 -- -- -- -0.323 3.79 -- -- -- --
267.65 0.762 5.18 -1.1 -- 1.25 -- -- -0.152 -- 34.6 114 -- --
285.35 0.787 5.15 -- 0.489 2.25 -- -- -0.0699 4.07 20.09 229 -- --
289.92 0.796 5.22 -1.35 -- -- -- -- -0.307 -- -- -- -- --
320.03 0.837 5.18 -- 0.576 -- -- -- -0.169 3.82 -- -- -- --
297.57 0.803 5.16 -- -- 2.34 -- -- -0.0401 -- 20.5 220 -- --
338.28 0.858 5.18 -- -- -- -- -- -0.156 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 235.68 wind 7.0 30 < th dose independent rect. 3 23
3 238.56 temperature 20.0 90 > th dose dependent rect. 1 2
4 239.22 temperature 15.0 720 > th dose independent rect. 3 16
5 240.36 humidity 90.0 14400 > th dose independent rect. 5 2
6 240.74 wind 9.0 14400 < th dose independent rect. 2 2
7 240.82 temperature 20.0 10 > th dose independent rect. 9 19
10 241.10 temperature 15.0 720 > th dose independent rect. 7 8
11 241.14 temperature 25.0 270 < th dose dependent rect. 16 20
17 241.36 humidity 90.0 14400 < th dose independent rect. 6 1
36 242.08 temperature 20.0 90 > th dose independent rect. 1 2
39 242.24 radiation 30.0 4320 < th dose independent rect. 18 13
46 242.34 humidity 90.0 14400 < th dose independent rect. 5 3
50 242.41 atmosphere 1015.0 10 < th dose dependent rect. 2 1
58 242.51 temperature 20.0 10 > th dose independent rect. 2 1
63 242.64 humidity 90.0 10 > th dose dependent rect. 2 1
70 242.70 temperature 25.0 270 < th dose dependent rect. 22 23
71 242.71 wind 9.0 30 < th dose dependent rect. 3 23
75 242.74 temperature 15.0 30 > th dose dependent rect. 9 19
83 242.85 wind 1.0 10 < th dose independent rect. 2 1
84 242.86 radiation 20.0 4320 < th dose independent rect. 21 9
91 242.90 temperature 25.0 10 < th dose independent rect. 2 1
93 242.92 atmosphere 1000.0 10 > th dose independent rect. 3 23
94 242.94 wind 9.0 10 < th dose independent rect. 2 1
95 242.94 temperature 10.0 10 > th dose independent rect. 2 1
98 242.94 humidity 50.0 10 > th dose independent rect. 2 1
101 242.94 atmosphere 995.0 10 > th dose independent rect. 2 1
102 242.94 atmosphere 1010.0 10 < th dose independent rect. 2 1
104 242.94 radiation 1.0 10 < th dose independent rect. 2 1
109 242.94 precipitation 0.1 10 < th dose independent rect. 2 1
110 242.94 temperature 10.0 10 > th dose independent rect. 3 23
111 242.94 radiation 1.0 10 < th dose dependent rect. 2 1
116 242.94 precipitation 0.1 10 < th dose dependent rect. 2 1
119 242.96 humidity 50.0 10 > th dose dependent rect. 2 1
135 243.06 temperature 20.0 270 > th dose independent rect. 6 21
140 243.13 wind 3.0 10 < th dose dependent rect. 2 1
143 243.20 precipitation 0.1 10 < th dose independent rect. 3 23
144 243.20 precipitation 0.1 10 < th dose dependent rect. 3 23
151 243.27 wind 9.0 10 < th dose dependent rect. 2 1
157 243.32 temperature 15.0 720 > th dose independent rect. 23 16
159 243.33 temperature 15.0 90 > th dose dependent rect. 6 22
162 243.36 atmosphere 995.0 10 > th dose dependent rect. 2 1
165 243.39 humidity 90.0 90 < th dose independent rect. 1 16
167 243.41 temperature 25.0 90 < th dose dependent sin 7 NA
171 243.45 temperature 25.0 270 < th dose dependent rect. 7 23
185 243.58 radiation 20.0 4320 > th dose independent rect. 6 2
199 243.58 temperature 15.0 720 > th dose independent rect. 15 16
201 243.59 temperature 25.0 270 < th dose dependent no NA NA
202 243.59 temperature 25.0 90 < th dose dependent rect. 23 13
213 243.64 temperature 30.0 10 < th dose dependent rect. 2 1
219 243.68 temperature 25.0 270 < th dose dependent sin 9 NA
258 243.77 wind 7.0 720 < th dose independent rect. 3 8
259 243.78 wind 1.0 30 > th dose independent rect. 2 1
277 243.89 atmosphere 995.0 90 > th dose dependent rect. 3 16
280 243.90 humidity 80.0 14400 > th dose dependent rect. 2 9
299 244.03 humidity 90.0 14400 > th dose dependent rect. 5 5
362 244.50 radiation 30.0 4320 < th dose independent rect. 5 2
375 244.58 temperature 15.0 720 > th dose independent rect. 3 8
396 244.70 radiation 1.0 14400 < th dose dependent rect. 3 1
400 244.72 humidity 90.0 14400 > th dose dependent rect. 7 2
409 244.76 atmosphere 995.0 30 > th dose dependent rect. 3 23
429 244.83 wind 5.0 90 < th dose independent rect. 4 15
443 244.92 humidity 80.0 14400 > th dose independent rect. 10 1
446 244.93 temperature 20.0 90 > th dose independent rect. 11 16
450 244.95 humidity 90.0 14400 > th dose independent rect. 20 1
529 245.29 humidity 50.0 30 > th dose independent rect. 3 23
534 245.32 humidity 80.0 14400 > th dose dependent sin 6 NA
555 245.40 temperature 10.0 43200 > th dose independent rect. 10 8
569 245.43 temperature 30.0 30 < th dose dependent rect. 3 23
576 245.46 radiation 30.0 4320 < th dose independent rect. 24 7
590 245.56 humidity 90.0 14400 > th dose independent sin 5 NA
614 245.64 humidity 90.0 14400 < th dose independent rect. 19 2
623 245.66 temperature 20.0 10 > th dose independent rect. 20 8
625 245.67 humidity 80.0 14400 < th dose independent rect. 10 1
670 245.88 humidity 80.0 14400 > th dose dependent rect. 19 17
673 245.90 temperature 15.0 90 > th dose dependent rect. 20 8
682 245.92 wind 9.0 1440 < th dose independent rect. 3 1
683 245.92 temperature 10.0 1440 > th dose independent rect. 3 1
686 245.92 temperature 30.0 1440 < th dose independent rect. 3 1
690 245.92 humidity 50.0 1440 > th dose independent rect. 3 1
699 245.92 atmosphere 995.0 1440 > th dose independent rect. 3 1
700 245.92 radiation 1.0 1440 < th dose independent rect. 3 1
723 245.92 temperature 10.0 1440 > th dose independent rect. 4 23
744 245.96 temperature 15.0 90 > th dose dependent rect. 11 16
754 245.99 temperature 20.0 10 > th dose independent rect. 11 17
759 246.01 humidity 90.0 14400 > th dose independent rect. 19 17
778 246.07 temperature 10.0 43200 > th dose independent rect. 18 2
798 246.12 humidity 90.0 14400 > th dose dependent rect. 3 19
865 246.26 atmosphere 1015.0 720 < th dose independent rect. 3 16
914 246.40 humidity 70.0 43200 < th dose dependent rect. 4 7
917 246.41 temperature 15.0 720 > th dose independent rect. 1 16
939 246.44 humidity 90.0 14400 > th dose dependent rect. 20 1
954 246.46 temperature 15.0 270 > th dose dependent rect. 17 23