Os03g0101000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Adenosine monophosphate binding protein 1 AMPBP1.
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Os03g0101000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Adenosine monophosphate binding protein 1 AMPBP1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.21 | 0.456 | 8.96 | 2.34 | 1.37 | 0.717 | -0.777 | -0.0369 | 0.618 | 19.9 | 6.409 | 9 | -- | -- |
| 94.21 | 0.452 | 8.96 | 2.34 | 1.37 | 0.711 | -0.811 | -- | 0.618 | 19.9 | 6.35 | 8 | -- | -- |
| 95.52 | 0.455 | 8.96 | 2.38 | 1.36 | 0.748 | -- | -0.219 | 0.622 | 19.8 | 7.038 | 10 | -- | -- |
| 95.82 | 0.456 | 8.96 | 2.36 | 1.35 | 0.735 | -- | -- | 0.614 | 19.9 | 6.413 | 6 | -- | -- |
| 165.71 | 0.6 | 8.93 | 2.37 | -- | 1.25 | -- | -0.473 | 0.621 | -- | 6.08 | 6 | -- | -- |
| 103.18 | 0.476 | 8.99 | 2.33 | 1.95 | -- | -0.68 | -- | 0.578 | 21.3 | -- | -- | -- | -- |
| 104.84 | 0.479 | 8.99 | 2.36 | 1.95 | -- | -- | -- | 0.578 | 21.3 | -- | -- | -- | -- |
| 166.01 | 0.6 | 8.92 | 2.34 | -- | 1.26 | -- | -- | 0.614 | -- | 5.885 | 4 | -- | -- |
| 241.65 | 0.728 | 9.03 | -- | 1.35 | 0.738 | -- | -- | 0.329 | 20 | 9.951 | 12 | -- | -- |
| 327.56 | 0.846 | 8.93 | 2.37 | -- | -- | -- | -- | 0.57 | -- | -- | -- | -- | -- |
| 251.14 | 0.741 | 9.05 | -- | 1.96 | -- | -- | -- | 0.316 | 21.4 | -- | -- | -- | -- |
| 308.57 | 0.818 | 8.98 | -- | -- | 1.29 | -- | -- | 0.342 | -- | 7.105 | 3 | -- | -- |
| 475.11 | 1.02 | 8.99 | -- | -- | -- | -- | -- | 0.308 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.45 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 2 | 90.63 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 8 |
| 3 | 90.70 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 5 | 90.94 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 10 | 19 |
| 8 | 91.03 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 14 | 91.15 | radiation | 10.0 | 10 | < th | dose dependent | sin | 5 | NA |
| 21 | 91.53 | wind | 5.0 | 270 | < th | dose independent | rect. | 22 | 19 |
| 22 | 91.55 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 14 |
| 25 | 91.58 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 16 |
| 27 | 91.69 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 29 | 91.76 | radiation | 1.0 | 30 | < th | dose independent | rect. | 24 | 17 |
| 37 | 91.86 | radiation | 1.0 | 30 | < th | dose independent | sin | 3 | NA |
| 39 | 91.88 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 41 | 91.91 | radiation | 1.0 | 30 | > th | dose independent | sin | 3 | NA |
| 52 | 92.02 | wind | 5.0 | 270 | < th | dose independent | rect. | 21 | 22 |
| 53 | 92.02 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 11 |
| 63 | 92.23 | humidity | 80.0 | 10 | > th | dose independent | rect. | 24 | 17 |
| 78 | 92.38 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 24 | 5 |
| 90 | 92.49 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 93 | 92.55 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 103 | 92.64 | radiation | 1.0 | 30 | < th | dose independent | rect. | 24 | 14 |
| 109 | 92.68 | temperature | 25.0 | 270 | < th | dose independent | sin | 2 | NA |
| 119 | 92.72 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 20 |
| 122 | 92.80 | radiation | 1.0 | 30 | < th | dose independent | rect. | 24 | 12 |
| 126 | 92.81 | radiation | 1.0 | 30 | < th | dose independent | rect. | 24 | 8 |
| 141 | 92.87 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 20 |
| 153 | 92.93 | temperature | 15.0 | 10 | > th | dose independent | rect. | 5 | 19 |
| 160 | 92.98 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 175 | 93.05 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 178 | 93.07 | humidity | 80.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 180 | 93.08 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 5 |
| 186 | 93.16 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 1 |
| 187 | 93.16 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 6 |
| 198 | 93.22 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 6 |
| 217 | 93.32 | temperature | 15.0 | 270 | > th | dose independent | rect. | 4 | 18 |
| 227 | 93.36 | wind | 5.0 | 270 | < th | dose independent | rect. | 11 | 16 |
| 256 | 93.48 | wind | 3.0 | 10 | < th | dose independent | rect. | 24 | 5 |
| 264 | 93.51 | radiation | 1.0 | 30 | < th | dose independent | rect. | 24 | 6 |
| 274 | 93.53 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 23 |
| 298 | 93.63 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 299 | 93.64 | humidity | 80.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 300 | 93.64 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 18 |
| 312 | 93.68 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 316 | 93.69 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 325 | 93.70 | temperature | 25.0 | 720 | < th | dose dependent | sin | 0 | NA |
| 326 | 93.70 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 7 | 6 |
| 352 | 93.76 | wind | 9.0 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 361 | 93.80 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 362 | 93.80 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 364 | 93.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 20 |
| 366 | 93.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 369 | 93.82 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 377 | 93.86 | wind | 3.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 378 | 93.86 | wind | 9.0 | 10 | < th | dose dependent | rect. | 24 | 5 |
| 382 | 93.88 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 396 | 93.93 | humidity | 80.0 | 270 | > th | dose independent | rect. | 22 | 6 |
| 417 | 93.96 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 24 | 5 |
| 427 | 93.99 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 24 | 5 |
| 428 | 93.99 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 429 | 93.99 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 430 | 94.00 | wind | 3.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 432 | 94.00 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 19 |
| 435 | 94.00 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 436 | 94.00 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 439 | 94.02 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 459 | 94.05 | wind | 9.0 | 270 | < th | dose dependent | rect. | 13 | 14 |
| 461 | 94.06 | wind | 9.0 | 10 | < th | dose independent | rect. | 24 | 5 |
| 462 | 94.06 | temperature | 10.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 463 | 94.06 | temperature | 30.0 | 10 | < th | dose independent | rect. | 24 | 5 |
| 464 | 94.06 | humidity | 50.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 473 | 94.06 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 17 |
| 476 | 94.06 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 24 | 5 |
| 478 | 94.06 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 6 | 16 |
| 482 | 94.07 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 520 | 94.14 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 6 |
| 534 | 94.17 | wind | 5.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 595 | 94.27 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 10 | 9 |
| 597 | 94.27 | wind | 9.0 | 30 | < th | dose dependent | rect. | 15 | 14 |
| 614 | 94.30 | wind | 1.0 | 90 | > th | dose independent | rect. | 24 | 5 |
| 646 | 94.36 | wind | 9.0 | 270 | < th | dose dependent | rect. | 22 | 6 |
| 671 | 94.39 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 10 |
| 678 | 94.40 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 682 | 94.40 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 13 | 16 |
| 685 | 94.41 | wind | 9.0 | 10 | < th | dose independent | rect. | 5 | 19 |
| 690 | 94.41 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 693 | 94.42 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 10 | 10 |
| 704 | 94.44 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 722 | 94.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 18 |
| 728 | 94.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 786 | 94.52 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 23 |
| 796 | 94.52 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 797 | 94.53 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 6 |
| 806 | 94.54 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 808 | 94.55 | humidity | 60.0 | 10 | > th | dose independent | rect. | 5 | 10 |
| 816 | 94.56 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 21 | 17 |
| 824 | 94.57 | radiation | 1.0 | 30 | > th | dose independent | rect. | 18 | 21 |
| 835 | 94.58 | wind | 5.0 | 270 | < th | dose independent | rect. | 22 | 6 |
| 842 | 94.58 | wind | 9.0 | 10 | < th | dose dependent | rect. | 13 | 16 |
| 848 | 94.59 | humidity | 60.0 | 10 | > th | dose independent | rect. | 5 | 19 |
| 871 | 94.61 | humidity | 80.0 | 270 | > th | dose independent | rect. | 24 | 1 |
| 886 | 94.63 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 10 |
| 902 | 94.64 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 8 | 9 |
| 921 | 94.66 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 23 | 5 |
| 952 | 94.70 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 21 | 17 |
| 957 | 94.71 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 958 | 94.71 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 959 | 94.71 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 962 | 94.71 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 963 | 94.71 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 970 | 94.71 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 4 |