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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0100800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plasma membrane H+-ATPase (EC 3.6.1.3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.78 (0.0481) R2 : 0.671
β1 : -4.75 (0.177) R2dD : 0.548 R2D : 0.319
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.81 (0.166) R2dE : 0.0893 R2E : 0.00877
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.62 (0.103) R2dN8 : 0.237 R2N8 : 0.0849
σ : 0.899
deviance : 372.79
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 69
memory length : 1305
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 4.68
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
346.8 0.875 5.72 -4.72 3.18 -3.65 1.57 0.882 -1.63 5.36 72.99 795 6.45 --
346.74 0.867 5.7 -4.72 3.14 -3.64 2.25 -- -1.61 5.46 72.92 802 6.37 --
348.06 0.869 5.72 -4.75 3.11 -3.6 -- 2.6 -1.64 5.39 73 807 6.5 --
358.58 0.882 5.72 -4.7 3 -3.45 -- -- -1.64 5.26 72 816 6.7 --
388.19 0.918 5.7 -4.97 -- -2.03 -- 2.04 -1.36 -- 68 1305 6.13 --
388.2 0.924 5.8 -4.6 1.17 -- 0.243 -- -1.71 1.39 -- -- -- --
388.41 0.923 5.81 -4.61 1.17 -- -- -- -1.71 1.31 -- -- -- --
372.79 0.899 5.78 -4.75 -- -1.81 -- -- -1.62 -- 69 1305 4.68 --
932.08 1.42 5.65 -- 2.01 -1.94 -- -- -1.15 3.98 73.48 813 7.74 --
472.56 1.02 5.79 -4.56 -- -- -- -- -1.69 -- -- -- -- --
948.42 1.44 5.69 -- 1.09 -- -- -- -1.2 1.16 -- -- -- --
946.29 1.43 5.66 -- -- -1.51 -- -- -1.09 -- 57.02 1344 4.81 --
1021.99 1.49 5.67 -- -- -- -- -- -1.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 343.56 temperature 25.0 720 > th dose dependent rect. 20 3
5 344.14 temperature 15.0 720 > th dose dependent rect. 17 4
6 344.26 temperature 25.0 720 > th dose dependent rect. 20 1
11 345.03 temperature 30.0 720 > th dose dependent rect. 18 1
29 345.67 humidity 70.0 720 > th dose independent rect. 18 14
76 348.78 humidity 70.0 720 > th dose independent rect. 18 7
83 349.13 temperature 30.0 720 > th dose independent rect. 18 1
97 349.21 humidity 90.0 720 < th dose dependent rect. 18 5
101 349.65 humidity 70.0 720 < th dose independent rect. 18 14
103 349.76 temperature 30.0 720 < th dose independent rect. 17 15
111 350.16 humidity 70.0 720 < th dose independent rect. 18 2
125 350.36 wind 1.0 90 < th dose dependent rect. 4 1
127 350.60 wind 1.0 90 < th dose independent rect. 4 1
129 350.63 humidity 90.0 720 < th dose independent rect. 16 7
146 351.29 temperature 30.0 720 < th dose independent rect. 18 7
155 351.65 humidity 90.0 720 < th dose independent rect. 17 4
159 351.88 humidity 80.0 720 < th dose dependent rect. 20 1
160 351.95 humidity 50.0 720 > th dose dependent rect. 18 6
178 352.46 temperature 30.0 1440 < th dose independent rect. 18 5
186 352.78 humidity 70.0 720 > th dose independent sin 12 NA
194 352.95 humidity 50.0 720 > th dose dependent rect. 17 15
216 353.67 temperature 30.0 720 < th dose independent rect. 17 2
299 354.88 temperature 30.0 1440 < th dose independent rect. 18 11
319 355.11 atmosphere 1005.0 270 > th dose independent rect. 24 11
324 355.22 temperature 10.0 90 > th dose dependent rect. 6 11
335 355.40 wind 1.0 10 > th dose independent sin 1 NA
342 355.55 precipitation 0.1 720 < th dose independent rect. 7 15
343 355.55 precipitation 0.1 720 < th dose dependent rect. 7 15
402 355.98 humidity 50.0 1440 < th dose independent rect. 16 1
416 356.21 humidity 50.0 1440 < th dose dependent rect. 16 1
432 356.31 wind 3.0 10 < th dose dependent sin 5 NA
436 356.35 wind 9.0 270 < th dose dependent rect. 5 10
448 356.59 temperature 20.0 90 > th dose dependent rect. 3 2
475 356.71 temperature 10.0 270 > th dose dependent rect. 16 13
483 356.89 wind 3.0 10 < th dose dependent rect. 2 12
485 356.91 radiation 1.0 720 > th dose independent rect. 17 2
504 356.94 atmosphere 1005.0 720 > th dose independent rect. 1 3
509 357.03 precipitation 0.1 720 < th dose independent rect. 17 11
510 357.03 precipitation 0.1 720 < th dose dependent rect. 17 11
511 357.08 humidity 50.0 720 > th dose dependent sin 12 NA
519 357.13 precipitation 0.1 720 < th dose independent rect. 17 18
523 357.13 precipitation 0.1 720 < th dose dependent rect. 17 18
524 357.15 atmosphere 1005.0 720 > th dose independent rect. 3 1
525 357.20 wind 5.0 270 < th dose independent rect. 5 9
526 357.21 humidity 80.0 720 > th dose independent rect. 21 1
537 357.26 humidity 80.0 720 > th dose dependent rect. 22 1
540 357.28 wind 1.0 90 < th dose independent rect. 1 4
554 357.42 precipitation 0.1 720 < th dose independent rect. 16 13
556 357.42 precipitation 0.1 720 < th dose dependent rect. 16 13
558 357.43 temperature 30.0 30 < th dose independent rect. 4 13
592 357.64 temperature 30.0 270 < th dose independent rect. 1 12
593 357.64 temperature 10.0 10 > th dose dependent rect. 6 10
597 357.67 precipitation 0.1 720 < th dose independent rect. 7 22
598 357.67 precipitation 0.1 720 < th dose dependent rect. 7 22
646 358.18 humidity 70.0 720 > th dose independent rect. 17 3
659 358.32 temperature 30.0 720 < th dose independent sin 12 NA
663 358.36 precipitation 0.1 720 < th dose independent rect. 9 20
664 358.36 precipitation 0.1 720 < th dose dependent rect. 9 20
665 358.37 temperature 20.0 10 > th dose dependent rect. 3 3
713 358.75 atmosphere 1015.0 720 < th dose dependent rect. 17 2
715 358.77 temperature 20.0 90 > th dose independent rect. 4 1
722 358.84 wind 1.0 10 < th dose independent rect. 4 8
727 358.90 wind 1.0 10 < th dose independent rect. 4 2
733 358.95 wind 3.0 10 < th dose dependent rect. 3 3
736 358.98 wind 3.0 720 > th dose independent rect. 11 1
745 359.05 wind 1.0 10 < th dose independent rect. 4 6
750 359.10 humidity 90.0 90 > th dose dependent rect. 4 1
786 359.43 precipitation 0.1 720 < th dose independent rect. 17 4
787 359.43 precipitation 0.1 720 < th dose dependent rect. 17 4
803 359.49 precipitation 0.1 720 < th dose independent rect. 10 9
804 359.49 precipitation 0.1 720 < th dose dependent rect. 10 9
818 359.58 precipitation 0.1 720 < th dose independent rect. 17 20
822 359.58 precipitation 0.1 720 < th dose dependent rect. 17 20
850 359.70 precipitation 0.1 720 < th dose independent rect. 12 17
851 359.70 precipitation 0.1 720 < th dose dependent rect. 12 17
875 359.80 precipitation 0.1 720 < th dose independent rect. 17 2
876 359.80 atmosphere 995.0 720 > th dose independent rect. 4 13
877 359.80 precipitation 0.1 720 < th dose dependent rect. 17 2
886 359.85 precipitation 0.1 720 < th dose independent rect. 11 23
887 359.85 precipitation 0.1 720 < th dose dependent rect. 11 23
895 359.90 precipitation 0.1 720 < th dose independent rect. 17 7
896 359.90 precipitation 0.1 720 < th dose dependent rect. 17 7
899 359.93 temperature 10.0 720 > th dose dependent sin 16 NA
901 359.94 precipitation 0.1 720 < th dose independent sin 15 NA
902 359.94 precipitation 0.1 720 < th dose dependent sin 15 NA
909 359.97 wind 1.0 90 > th dose independent rect. 4 12
911 359.98 humidity 90.0 720 < th dose independent rect. 10 14
936 360.08 wind 3.0 10 < th dose dependent rect. 24 14
938 360.09 humidity 90.0 90 > th dose independent rect. 4 1
976 360.24 precipitation 0.1 720 < th dose independent rect. 17 22
978 360.24 precipitation 0.1 720 < th dose dependent rect. 17 22
981 360.26 temperature 10.0 1440 > th dose independent rect. 6 12
984 360.26 temperature 10.0 1440 > th dose independent rect. 18 12
987 360.26 humidity 50.0 1440 > th dose independent rect. 18 12
989 360.26 radiation 20.0 1440 < th dose independent rect. 18 12