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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0833900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 64 precursor (EC 1.11.1.7) (Atperox P64) (PRXR4) (ATP17a).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0339) R2 : 0.175
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.96 (0.403) R2dE : 0.176 R2E : 0.174
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0483 (0.0715) R2dN8 : 0.00108 R2N8 : -0.000975
σ : 0.636
deviance : 186.56
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 14.83
memory length : 1710
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.31 0.613 3.41 0.16 0.374 23.3 -1.37 42.5 0.0155 21.3 14.91 1710 -- --
174.39 0.615 3.25 -0.355 0.351 2.87 -1.36 -- -0.0526 22.7 14.87 1474 -- --
176.61 0.619 3.4 0.206 0.368 23.8 -- 42.8 0.0235 21.6 14.84 1709 -- --
177.27 0.62 3.2 -0.342 0.384 3.52 -- -- -0.0258 22.2 14.85 1698 -- --
184.6 0.633 3.38 0.184 -- 24.6 -- 44.2 0.0154 -- 14.8 1707 -- --
195.3 0.655 3.21 -0.65 0.422 -- -1.72 -- -0.0701 21.5 -- -- -- --
206.12 0.672 3.21 -0.588 0.427 -- -- -- -0.0688 21.9 -- -- -- --
185.04 0.634 3.19 -0.3 -- 3.67 -- -- 0.000348 -- 14.8 1709 -- --
178.7 0.623 3.2 -- 0.386 3.69 -- -- 0.00881 21.7 14.9 1709 -- --
217.07 0.688 3.2 -0.583 -- -- -- -- -0.0688 -- -- -- -- --
215.23 0.686 3.2 -- 0.426 -- -- -- -0.00333 21.8 -- -- -- --
186.56 0.636 3.17 -- -- 3.96 -- -- 0.0483 -- 14.83 1710 -- --
226.04 0.702 3.18 -- -- -- -- -- -0.00414 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 167.11 temperature 20 1440 > th dose independent rect. 13 1
2 167.18 temperature 20 720 < th dose independent rect. 16 1
3 167.32 temperature 25 720 < th dose dependent rect. 17 1
4 167.69 temperature 20 720 < th dose dependent rect. 10 8
5 167.95 humidity 90 720 > th dose dependent rect. 15 3
12 168.35 temperature 25 720 < th dose dependent rect. 10 11
13 168.36 humidity 90 720 > th dose dependent rect. 10 10
14 168.39 temperature 20 720 < th dose independent rect. 11 6
18 168.53 humidity 90 720 > th dose dependent rect. 16 1
20 168.54 humidity 90 720 > th dose independent rect. 15 3
23 168.61 temperature 20 270 < th dose dependent rect. 17 4
36 168.80 temperature 25 720 < th dose dependent sin 20 NA
39 168.84 temperature 20 270 < th dose dependent rect. 19 1
62 169.20 temperature 25 720 < th dose dependent rect. 13 6
74 169.39 humidity 90 720 > th dose dependent rect. 13 7
110 169.81 humidity 90 720 > th dose independent rect. 17 1
112 169.82 temperature 20 720 > th dose independent rect. 11 8
116 169.88 humidity 90 720 > th dose independent rect. 10 9
159 170.28 radiation 1 720 < th dose independent rect. 14 1
160 170.28 radiation 1 720 < th dose dependent rect. 14 1
173 170.39 temperature 20 90 < th dose dependent sin 16 NA
176 170.40 temperature 15 1440 < th dose independent rect. 4 6
179 170.47 temperature 15 4320 < th dose dependent sin 5 NA
190 170.52 temperature 15 1440 < th dose dependent rect. 4 6
216 170.67 temperature 15 1440 > th dose independent rect. 2 22
227 170.78 temperature 15 1440 < th dose independent rect. 4 3
238 170.84 temperature 15 4320 < th dose dependent rect. 23 11
254 170.91 temperature 10 720 > th dose dependent sin 20 NA
255 170.91 temperature 15 4320 < th dose dependent rect. 23 8
265 170.95 radiation 1 720 < th dose independent rect. 10 5
267 170.95 radiation 1 720 < th dose dependent rect. 10 5
292 171.01 temperature 10 720 > th dose dependent rect. 9 15
297 171.04 temperature 15 1440 < th dose independent sin 2 NA
324 171.13 humidity 90 720 < th dose independent rect. 11 8
338 171.15 temperature 15 4320 < th dose dependent rect. 1 18
339 171.15 temperature 15 1440 < th dose dependent rect. 1 20
341 171.17 temperature 15 1440 > th dose independent sin 2 NA
358 171.20 temperature 10 720 > th dose dependent rect. 11 9
363 171.21 temperature 15 1440 < th dose independent rect. 3 22
369 171.23 temperature 15 1440 > th dose independent rect. 4 23
375 171.24 temperature 15 1440 < th dose independent rect. 1 22
390 171.27 temperature 20 90 < th dose dependent rect. 15 20
411 171.31 temperature 15 1440 < th dose dependent rect. 24 23
423 171.35 temperature 20 720 < th dose independent sin 20 NA
424 171.36 temperature 20 720 > th dose independent sin 20 NA
430 171.37 temperature 15 1440 > th dose independent rect. 6 21
464 171.47 temperature 20 90 < th dose dependent rect. 15 14
468 171.48 temperature 20 90 < th dose dependent rect. 17 12
493 171.55 temperature 15 1440 < th dose dependent no NA NA
501 171.55 temperature 15 1440 < th dose dependent rect. 9 20
506 171.55 temperature 15 1440 < th dose dependent rect. 13 21
507 171.55 temperature 15 1440 < th dose dependent rect. 17 21
517 171.55 temperature 15 1440 < th dose dependent rect. 4 23
532 171.56 temperature 15 1440 < th dose dependent rect. 14 17
533 171.56 temperature 15 1440 < th dose dependent rect. 17 17
555 171.57 temperature 15 1440 < th dose dependent rect. 4 3
559 171.57 temperature 15 1440 < th dose dependent rect. 17 13
589 171.58 temperature 15 1440 > th dose independent rect. 14 22
606 171.59 temperature 15 1440 < th dose dependent rect. 21 23
631 171.63 temperature 15 1440 > th dose independent sin 16 NA
639 171.65 temperature 15 1440 < th dose independent sin 16 NA
650 171.67 temperature 15 1440 > th dose independent rect. 12 16
661 171.68 temperature 15 1440 < th dose dependent sin 13 NA
670 171.69 temperature 15 1440 > th dose independent rect. 18 8
704 171.74 temperature 15 1440 < th dose independent rect. 13 14
770 171.82 temperature 15 1440 < th dose independent no NA NA
775 171.82 temperature 15 1440 < th dose independent rect. 9 22
776 171.82 temperature 15 1440 < th dose independent rect. 17 22
786 171.83 temperature 15 1440 > th dose independent rect. 2 18
796 171.84 temperature 15 1440 < th dose independent rect. 12 23
837 171.87 temperature 15 1440 < th dose independent rect. 6 20
846 171.88 temperature 15 1440 < th dose independent rect. 19 7
865 171.89 temperature 15 1440 < th dose independent rect. 17 10
884 171.89 temperature 15 1440 < th dose dependent rect. 21 5
949 171.96 temperature 15 1440 > th dose independent rect. 19 23
955 171.97 temperature 15 1440 > th dose independent no NA NA
972 171.99 temperature 15 1440 > th dose independent rect. 16 23