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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0833500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sodium/hydrogen exchanger family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.0459) R2 : 0.00621
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.163 (0.0966) R2dN8 : 0.00802 R2N8 : 0.00621
σ : 0.864
deviance : 342.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
331.96 0.856 3.1 0.305 0.0551 0.688 -0.869 -3.18 -0.0897 20.2 58.43 94 -- --
336.76 0.855 3.09 0.315 0.0186 0.228 -0.914 -- -0.107 18.6 68 111 -- --
334.01 0.851 3.11 0.294 0.058 0.949 -- -3.95 -0.114 21.3 55.52 90 -- --
338.6 0.863 3.09 0.337 0.094 0.243 -- -- -0.111 23.5 69.4 105 -- --
334.16 0.851 3.1 0.309 -- 0.983 -- -4.16 -0.0978 -- 55.25 90 -- --
337.68 0.861 3.09 0.331 0.0539 -- -0.822 -- -0.122 18.7 -- -- -- --
339.28 0.863 3.09 0.342 0.0637 -- -- -- -0.125 21.3 -- -- -- --
338.85 0.857 3.09 0.333 -- 0.19 -- -- -0.111 -- 68.25 110 -- --
340.74 0.86 3.1 -- 0.165 0.328 -- -- -0.146 1.1 78.96 43 -- --
339.52 0.861 3.09 0.342 -- -- -- -- -0.125 -- -- -- -- --
342.37 0.866 3.1 -- 0.0641 -- -- -- -0.163 21.7 -- -- -- --
341.76 0.861 3.1 -- -- 0.214 -- -- -0.147 -- 68 111 -- --
342.61 0.864 3.1 -- -- -- -- -- -0.163 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 318.64 precipitation 0.1 270 > th dose independent rect. 2 1
2 318.64 precipitation 0.1 270 > th dose dependent rect. 2 1
3 319.58 wind 1.0 1440 < th dose independent rect. 13 1
4 320.07 wind 1.0 1440 < th dose dependent rect. 13 1
5 320.09 wind 1.0 1440 > th dose independent rect. 13 1
7 320.44 precipitation 0.1 720 > th dose independent rect. 23 1
8 320.44 precipitation 0.1 720 > th dose dependent rect. 23 1
11 320.51 radiation 40.0 1440 > th dose independent rect. 15 1
81 323.08 temperature 10.0 1440 > th dose independent rect. 19 11
84 323.08 temperature 30.0 1440 < th dose independent rect. 19 11
88 323.08 humidity 50.0 1440 > th dose independent rect. 19 11
90 323.08 atmosphere 995.0 1440 > th dose independent rect. 19 11
91 323.08 radiation 20.0 1440 < th dose independent rect. 19 11
100 323.08 temperature 10.0 1440 > th dose independent rect. 6 13
107 323.25 wind 1.0 720 < th dose dependent rect. 23 1
120 323.60 wind 7.0 270 > th dose independent rect. 14 1
123 323.62 wind 1.0 720 < th dose independent rect. 23 1
140 324.16 atmosphere 1000.0 90 < th dose dependent rect. 17 4
142 324.22 atmosphere 1000.0 30 < th dose independent rect. 17 3
146 324.23 atmosphere 1000.0 10 < th dose dependent rect. 17 3
192 324.57 precipitation 0.1 1440 > th dose independent rect. 8 1
193 324.57 precipitation 0.1 1440 > th dose dependent rect. 8 1
208 324.96 atmosphere 1000.0 10 < th dose independent rect. 14 5
212 325.06 wind 1.0 4320 < th dose dependent rect. 23 1
213 325.07 atmosphere 1000.0 90 < th dose independent rect. 13 5
214 325.09 wind 1.0 720 < th dose dependent rect. 13 11
217 325.14 atmosphere 1000.0 270 < th dose independent rect. 14 1
236 325.62 wind 1.0 1440 < th dose independent rect. 12 12
238 325.68 radiation 40.0 1440 > th dose dependent rect. 15 1
262 325.82 wind 1.0 1440 < th dose independent rect. 10 14
265 325.88 wind 1.0 90 < th dose independent rect. 22 3
301 326.34 temperature 25.0 10 > th dose independent rect. 17 1
341 326.52 wind 1.0 1440 < th dose independent sin 20 NA
345 326.58 radiation 1.0 30 < th dose dependent rect. 5 1
360 326.85 wind 1.0 4320 < th dose independent rect. 23 1
361 326.87 wind 7.0 270 > th dose dependent rect. 14 1
364 326.90 precipitation 0.1 90 < th dose independent rect. 5 13
366 326.90 precipitation 0.1 90 < th dose dependent rect. 5 13
370 327.03 wind 1.0 1440 > th dose independent rect. 12 12
374 327.07 wind 1.0 1440 > th dose independent rect. 10 14
376 327.11 wind 1.0 90 < th dose dependent rect. 22 3
391 327.32 wind 1.0 1440 < th dose dependent sin 20 NA
398 327.38 radiation 1.0 14400 < th dose independent rect. 7 1
401 327.39 radiation 1.0 14400 > th dose independent rect. 7 1
403 327.41 radiation 10.0 90 > th dose independent rect. 10 5
405 327.44 radiation 1.0 1440 < th dose dependent rect. 7 6
410 327.48 wind 1.0 1440 < th dose dependent rect. 10 15
413 327.50 wind 3.0 4320 > th dose dependent rect. 4 7
416 327.52 radiation 1.0 14400 < th dose dependent rect. 7 1
417 327.54 radiation 1.0 1440 > th dose independent rect. 7 8
419 327.59 wind 1.0 90 < th dose independent rect. 13 12
426 327.62 radiation 1.0 90 < th dose dependent rect. 17 12
427 327.65 radiation 1.0 1440 < th dose independent rect. 7 8
435 327.70 precipitation 0.1 720 > th dose independent rect. 20 1
436 327.70 precipitation 0.1 720 > th dose dependent rect. 20 1
438 327.72 wind 1.0 1440 > th dose independent sin 20 NA
442 327.72 wind 1.0 1440 < th dose independent rect. 7 18
454 327.79 wind 7.0 90 < th dose independent rect. 18 11
458 327.82 wind 1.0 4320 > th dose independent rect. 23 1
459 327.86 radiation 10.0 10 < th dose independent rect. 12 1
466 327.90 radiation 1.0 90 < th dose dependent rect. 6 23
474 327.94 wind 9.0 90 < th dose independent rect. 5 13
481 327.97 radiation 10.0 90 < th dose dependent rect. 10 2
484 328.00 precipitation 0.1 4320 < th dose independent rect. 4 1
486 328.00 radiation 20.0 720 < th dose independent rect. 15 14
487 328.00 precipitation 0.1 4320 < th dose dependent rect. 4 1
497 328.07 wind 1.0 90 < th dose independent rect. 4 1
503 328.11 radiation 10.0 270 > th dose independent rect. 11 1
532 328.17 wind 3.0 10 > th dose independent rect. 17 1
543 328.20 radiation 1.0 30 < th dose independent rect. 5 1
544 328.20 radiation 1.0 1440 > th dose independent rect. 7 3
546 328.20 wind 3.0 4320 > th dose dependent rect. 4 10
547 328.21 radiation 1.0 90 < th dose independent rect. 17 12
553 328.25 precipitation 0.1 4320 > th dose dependent rect. 3 2
555 328.27 temperature 25.0 10 > th dose dependent rect. 17 1
566 328.32 wind 3.0 4320 > th dose dependent rect. 1 13
570 328.34 precipitation 0.1 1440 < th dose independent rect. 1 1
574 328.34 precipitation 0.1 1440 < th dose dependent rect. 1 1
585 328.40 humidity 70.0 720 > th dose independent rect. 19 14
598 328.44 wind 1.0 90 < th dose dependent rect. 4 1
599 328.44 radiation 40.0 30 > th dose dependent rect. 9 1
619 328.45 atmosphere 1000.0 270 < th dose independent rect. 5 1
621 328.46 precipitation 0.1 4320 > th dose independent rect. 4 1
632 328.48 temperature 10.0 90 > th dose independent rect. 18 11
633 328.48 humidity 50.0 90 > th dose independent rect. 18 11
637 328.48 temperature 10.0 90 > th dose independent rect. 5 13
638 328.48 atmosphere 1015.0 90 < th dose independent rect. 5 13
664 328.52 atmosphere 995.0 90 > th dose independent rect. 18 11
669 328.53 radiation 1.0 270 > th dose dependent rect. 11 1
677 328.55 wind 1.0 1440 > th dose independent rect. 7 18
687 328.61 wind 1.0 4320 < th dose independent rect. 17 7
688 328.61 wind 3.0 4320 > th dose dependent sin 5 NA
695 328.64 radiation 10.0 90 < th dose independent rect. 5 13
696 328.64 wind 1.0 1440 < th dose dependent rect. 7 18
699 328.66 wind 1.0 270 < th dose independent rect. 9 16
700 328.67 humidity 80.0 720 > th dose independent rect. 20 2
712 328.69 atmosphere 1000.0 90 < th dose independent rect. 4 5
728 328.73 atmosphere 995.0 90 > th dose independent rect. 5 13
760 328.89 wind 3.0 4320 > th dose independent rect. 23 12
764 328.90 radiation 10.0 90 < th dose independent rect. 5 7
769 328.91 atmosphere 1000.0 10 < th dose independent rect. 5 5
775 328.92 radiation 1.0 270 < th dose independent rect. 5 1
777 328.93 wind 1.0 4320 > th dose independent rect. 17 8
796 328.94 temperature 30.0 90 < th dose independent rect. 19 10
839 329.05 atmosphere 1000.0 270 < th dose independent rect. 2 5
842 329.06 radiation 30.0 10 > th dose independent rect. 15 1
873 329.10 atmosphere 1000.0 270 < th dose independent rect. 23 9
875 329.10 temperature 30.0 10 < th dose independent rect. 10 19
879 329.11 radiation 10.0 10 < th dose independent rect. 11 8
883 329.13 atmosphere 1000.0 90 < th dose independent rect. 23 11
885 329.13 radiation 1.0 90 > th dose dependent rect. 10 5
901 329.17 humidity 70.0 720 < th dose independent rect. 19 14
906 329.19 wind 1.0 90 > th dose independent rect. 4 14
916 329.20 precipitation 0.1 4320 > th dose dependent rect. 23 6
930 329.21 precipitation 0.1 14400 > th dose independent rect. 7 1
933 329.21 precipitation 0.1 14400 > th dose dependent rect. 7 1
934 329.21 wind 1.0 90 < th dose dependent rect. 13 12
937 329.22 wind 3.0 4320 < th dose independent rect. 23 12
953 329.27 atmosphere 1000.0 720 < th dose independent rect. 22 3
962 329.29 wind 1.0 270 < th dose independent rect. 9 18
967 329.32 atmosphere 1000.0 10 < th dose independent rect. 9 1
989 329.34 radiation 10.0 10 < th dose independent rect. 7 12