Os02g0833200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0833200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.75 | 0.438 | 7.66 | -0.223 | 1.27 | -0.985 | 0.217 | 5.16 | 0.371 | 5.07 | 21.6 | 807 | -- | -- |
| 99.37 | 0.464 | 7.76 | -1.1 | 1.44 | -0.839 | -0.321 | -- | 0.175 | 5.58 | 0.02017 | 10257 | -- | -- |
| 86.78 | 0.434 | 7.66 | -0.194 | 1.3 | -0.999 | -- | 5.18 | 0.378 | 5.05 | 21.84 | 849 | -- | -- |
| 99.53 | 0.465 | 7.76 | -1.08 | 1.43 | -0.868 | -- | -- | 0.193 | 5.57 | 2.457 | 10267 | -- | -- |
| 130.5 | 0.532 | 7.68 | -0.216 | -- | -2.02 | -- | 6.67 | 0.418 | -- | 23.78 | 409 | -- | -- |
| 111.61 | 0.495 | 7.82 | -1.59 | 1.42 | -- | -0.292 | -- | -0.08 | 5.64 | -- | -- | -- | -- |
| 111.82 | 0.495 | 7.82 | -1.59 | 1.42 | -- | -- | -- | -0.0788 | 5.62 | -- | -- | -- | -- |
| 153.22 | 0.577 | 7.8 | -1.29 | -- | -1.47 | -- | -- | 0.111 | -- | 24.2 | 378 | -- | -- |
| 114.21 | 0.498 | 7.68 | -- | 1.42 | -1.46 | -- | -- | 0.575 | 5.51 | -1.861 | 16717 | -- | -- |
| 215.84 | 0.686 | 7.84 | -1.55 | -- | -- | -- | -- | -0.0448 | -- | -- | -- | -- | -- |
| 178.57 | 0.625 | 7.78 | -- | 1.39 | -- | -- | -- | 0.0984 | 5.67 | -- | -- | -- | -- |
| 195.66 | 0.651 | 7.77 | -- | -- | -1.67 | -- | -- | 0.289 | -- | 23.69 | 388 | -- | -- |
| 278.87 | 0.779 | 7.8 | -- | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.48 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 2 | 78.86 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 3 | 79.01 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 18 |
| 9 | 81.14 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 10 | 81.18 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 14 | 81.73 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 21 | 82.01 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 28 | 82.31 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 33 | 82.45 | wind | 1 | 43200 | < th | dose dependent | sin | 16 | NA |
| 36 | 82.52 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 37 | 82.53 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 47 | 82.77 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 68 | 83.33 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 71 | 83.41 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 83 | 83.62 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 84 | 83.63 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 86 | 83.67 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 95 | 83.80 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 96 | 83.82 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 107 | 83.92 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 9 |
| 113 | 83.97 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 17 |
| 115 | 83.98 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 118 | 84.00 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 125 | 84.04 | wind | 1 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 126 | 84.04 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 5 |
| 129 | 84.05 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 5 |
| 135 | 84.07 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 136 | 84.08 | humidity | 80 | 43200 | < th | dose independent | sin | 9 | NA |
| 145 | 84.11 | wind | 9 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 146 | 84.12 | radiation | 10 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 157 | 84.17 | humidity | 80 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 176 | 84.21 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 199 | 84.24 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 222 | 84.25 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 226 | 84.26 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 227 | 84.26 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 229 | 84.26 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 230 | 84.26 | wind | 7 | 43200 | < th | dose dependent | rect. | 11 | 10 |
| 250 | 84.30 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 265 | 84.32 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 8 |
| 270 | 84.33 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 4 | 18 |
| 284 | 84.35 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 12 |
| 315 | 84.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 316 | 84.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 318 | 84.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 325 | 84.40 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 326 | 84.41 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 328 | 84.41 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 353 | 84.44 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 372 | 84.46 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 2 | NA |
| 375 | 84.46 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 408 | 84.49 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 417 | 84.50 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 2 | NA |
| 419 | 84.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 431 | 84.50 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 481 | 84.54 | atmosphere | 1010 | 14400 | < th | dose independent | no | NA | NA |
| 492 | 84.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 518 | 84.56 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 560 | 84.59 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 632 | 84.65 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 638 | 84.65 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 640 | 84.66 | humidity | 80 | 43200 | > th | dose independent | sin | 9 | NA |
| 673 | 84.68 | atmosphere | 1010 | 14400 | > th | dose independent | no | NA | NA |
| 683 | 84.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 684 | 84.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 685 | 84.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 709 | 84.69 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 738 | 84.71 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 771 | 84.74 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 803 | 84.77 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 15 | NA |
| 816 | 84.77 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 846 | 84.80 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 870 | 84.81 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 920 | 84.83 | wind | 5 | 43200 | < th | dose dependent | sin | 21 | NA |
| 996 | 84.89 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 9 |