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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0832000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Calmodulin-like-domain protein kinase CPK2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.0372) R2 : 0.123
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.756 (0.095) R2dC : 0.123 R2C : 0.121
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0568 (0.0781) R2dN8 : 0.00132 R2N8 : -0.000121
σ : 0.7
deviance : 223.74
__
_____
C
peak time of C : 19.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.44 0.659 3.38 0.681 0.777 -1.4 1.15 -0.104 0.273 20 0.4399 1427 -- --
196.42 0.653 3.37 0.698 0.783 -1.37 1.12 -- 0.27 20 0.4 1422 -- --
200.28 0.659 3.37 0.672 0.786 -1.34 -- 0.122 0.274 20.1 0.4306 1421 -- --
200.23 0.659 3.38 0.66 0.787 -1.37 -- -- 0.27 20.1 0.3825 1421 -- --
227.2 0.702 3.33 0.69 -- -1.45 -- 0.19 0.303 -- 0.84 1492 -- --
217.15 0.691 3.41 0.369 0.76 -- 1.11 -- 0.0938 19.8 -- -- -- --
220.7 0.696 3.41 0.34 0.758 -- -- -- 0.0946 19.9 -- -- -- --
226.97 0.702 3.35 0.604 -- -1.48 -- -- 0.267 -- 0.8392 1496 -- --
210.6 0.676 3.37 -- 0.789 -1.06 -- -- 0.212 20.1 0.43 1416 -- --
251.93 0.742 3.39 0.331 -- -- -- -- 0.0844 -- -- -- -- --
223.74 0.7 3.42 -- 0.756 -- -- -- 0.0568 19.9 -- -- -- --
235.57 0.715 3.36 -- -- -1.2 -- -- 0.197 -- 1.02 1499 -- --
254.83 0.745 3.4 -- -- -- -- -- 0.0477 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 189.46 temperature 30 10 < th dose dependent rect. 15 16
10 190.37 temperature 20 270 > th dose dependent rect. 17 7
14 191.19 humidity 50 10 > th dose dependent rect. 14 4
23 192.19 temperature 10 270 > th dose dependent rect. 16 22
37 192.85 temperature 10 270 > th dose dependent rect. 6 17
44 193.21 radiation 1 1440 > th dose independent rect. 8 10
45 193.23 radiation 1 720 > th dose independent rect. 9 21
56 193.44 radiation 1 720 < th dose independent rect. 7 11
62 193.61 radiation 1 10 < th dose independent rect. 15 3
67 193.68 radiation 1 1440 > th dose independent rect. 12 6
71 193.72 radiation 1 10 < th dose dependent rect. 5 13
79 193.85 radiation 1 30 < th dose independent rect. 5 13
94 194.22 temperature 25 720 > th dose independent rect. 10 11
109 194.33 radiation 1 1440 < th dose independent rect. 12 6
127 194.40 radiation 1 720 < th dose dependent rect. 7 11
129 194.42 temperature 25 720 < th dose independent rect. 9 12
141 194.49 temperature 25 30 < th dose independent rect. 15 16
147 194.54 temperature 25 720 < th dose independent rect. 8 14
151 194.57 temperature 30 90 < th dose dependent rect. 14 5
152 194.58 humidity 60 90 > th dose independent rect. 14 4
158 194.61 temperature 30 10 < th dose dependent rect. 14 4
180 194.73 radiation 1 1440 > th dose independent sin 21 NA
188 194.78 radiation 1 1440 < th dose dependent rect. 8 22
208 194.84 radiation 1 1440 < th dose independent rect. 8 22
228 194.89 temperature 25 720 < th dose independent rect. 11 9
233 194.90 radiation 1 1440 < th dose dependent sin 23 NA
242 194.95 radiation 1 1440 < th dose dependent rect. 12 6
268 195.04 temperature 25 720 < th dose independent sin 21 NA
300 195.22 radiation 1 1440 < th dose independent sin 21 NA
316 195.28 radiation 10 90 < th dose dependent rect. 15 2
358 195.37 temperature 15 90 > th dose dependent rect. 18 20
359 195.37 radiation 1 720 < th dose dependent rect. 21 21
364 195.38 radiation 10 43200 < th dose dependent rect. 19 8
400 195.49 humidity 70 10 > th dose independent rect. 14 4
428 195.58 radiation 1 10 < th dose dependent rect. 15 3
450 195.65 radiation 1 1440 < th dose dependent rect. 3 15
497 195.79 temperature 30 90 < th dose independent rect. 14 4
505 195.84 humidity 60 270 > th dose independent rect. 14 2
516 195.87 temperature 10 270 > th dose dependent rect. 4 21
528 195.92 radiation 1 720 < th dose independent rect. 21 21
563 196.04 temperature 25 270 > th dose independent rect. 17 5
579 196.07 temperature 25 720 > th dose independent sin 21 NA
585 196.09 radiation 1 1440 > th dose independent rect. 14 2
613 196.21 radiation 1 1440 < th dose independent rect. 14 2
622 196.24 temperature 25 270 > th dose independent rect. 18 3
655 196.37 temperature 25 30 < th dose independent rect. 12 19
721 196.59 temperature 15 10 > th dose dependent rect. 7 18
726 196.60 radiation 1 1440 < th dose dependent rect. 5 23
757 196.65 radiation 10 30 < th dose dependent rect. 12 6
772 196.67 temperature 20 720 > th dose dependent rect. 10 11
796 196.72 radiation 1 1440 < th dose dependent no NA NA
813 196.77 temperature 30 720 < th dose dependent rect. 11 7
815 196.77 radiation 1 1440 < th dose dependent rect. 11 23
834 196.82 radiation 1 1440 < th dose dependent rect. 17 23
853 196.90 humidity 50 10 > th dose dependent rect. 12 6
954 197.14 temperature 30 10 < th dose dependent rect. 23 21
991 197.24 temperature 30 270 < th dose dependent rect. 15 1