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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0831900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Calcium dependent protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0278) R2 : 0.0217
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.186 (0.0585) R2dN8 : 0.0281 R2N8 : 0.0217
σ : 0.524
deviance : 125.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.81 0.497 3 0.297 0.336 -0.364 0.386 -1.01 0.243 2.19 79.73 5949 -- --
113.21 0.496 3 0.327 0.347 -0.408 0.421 -- 0.248 2.23 79.3 5720 -- --
112.32 0.494 3 0.279 0.333 -0.357 -- -1.09 0.24 1.89 80 6076 -- --
113.82 0.497 3 0.313 0.351 -0.402 -- -- 0.262 2.05 81.55 5706 -- --
118.23 0.509 3.01 0.348 -- -0.378 -- -0.675 0.206 -- 82.02 6123 -- --
115.56 0.504 3 0.335 0.337 -- 0.373 -- 0.218 2.22 -- -- -- --
116.06 0.504 3.01 0.325 0.336 -- -- -- 0.216 2.01 -- -- -- --
118.77 0.51 3.01 0.349 -- -0.401 -- -- 0.205 -- 83 6121 -- --
116.08 0.502 3 -- 0.356 -0.469 -- -- 0.246 2 81.99 7082 -- --
122.85 0.518 3 0.339 -- -- -- -- 0.224 -- -- -- -- --
118.83 0.51 3.01 -- 0.342 -- -- -- 0.18 2.03 -- -- -- --
121.71 0.515 3.02 -- -- -0.4 -- -- 0.167 -- 84 6136 -- --
125.88 0.524 3.01 -- -- -- -- -- 0.186 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 98.97 atmosphere 1000.0 10 < th dose independent rect. 23 1
19 106.71 atmosphere 1000.0 90 < th dose independent rect. 22 5
23 106.87 wind 1.0 270 < th dose dependent rect. 20 2
24 106.88 wind 1.0 270 < th dose dependent rect. 17 5
54 108.19 wind 1.0 270 < th dose independent rect. 20 1
59 108.63 atmosphere 1000.0 90 < th dose independent rect. 5 5
60 108.63 atmosphere 1000.0 10 < th dose independent rect. 5 6
64 108.65 atmosphere 1000.0 90 < th dose independent rect. 8 1
65 108.65 atmosphere 1000.0 10 < th dose independent rect. 8 2
83 108.73 atmosphere 1000.0 270 < th dose independent rect. 5 2
105 109.08 atmosphere 1000.0 90 < th dose dependent rect. 9 1
128 109.37 atmosphere 1000.0 90 < th dose dependent rect. 5 5
144 109.42 atmosphere 1000.0 270 < th dose dependent rect. 6 1
254 110.68 wind 1.0 1440 < th dose dependent rect. 10 1
257 110.73 humidity 80.0 90 > th dose independent rect. 22 7
278 110.90 humidity 80.0 10 > th dose independent rect. 22 8
279 110.90 wind 7.0 90 < th dose dependent rect. 22 7
297 111.04 wind 3.0 90 < th dose independent rect. 22 7
310 111.10 temperature 10.0 1440 > th dose independent rect. 23 7
313 111.10 temperature 30.0 1440 < th dose independent rect. 23 7
317 111.10 humidity 50.0 1440 > th dose independent rect. 23 7
326 111.10 atmosphere 995.0 1440 > th dose independent rect. 23 7
327 111.10 radiation 20.0 1440 < th dose independent rect. 23 7
336 111.10 temperature 10.0 1440 > th dose independent rect. 6 17
345 111.14 precipitation 0.1 1440 > th dose independent rect. 21 4
346 111.14 precipitation 0.1 1440 > th dose dependent rect. 21 4
350 111.19 temperature 15.0 90 > th dose dependent rect. 22 7
352 111.25 wind 9.0 1440 < th dose independent rect. 23 7
372 111.34 temperature 15.0 10 > th dose dependent rect. 22 8
401 111.55 wind 1.0 14400 > th dose independent rect. 8 2
402 111.55 temperature 15.0 1440 > th dose independent rect. 6 4
406 111.56 temperature 15.0 270 > th dose independent rect. 17 14
407 111.56 atmosphere 1000.0 720 < th dose dependent rect. 22 4
408 111.57 wind 3.0 14400 < th dose dependent rect. 1 12
411 111.58 wind 3.0 14400 < th dose dependent rect. 4 8
436 111.64 humidity 90.0 4320 > th dose dependent rect. 7 2
451 111.66 wind 3.0 14400 < th dose dependent rect. 22 15
454 111.67 wind 3.0 14400 < th dose dependent rect. 7 3
473 111.72 wind 3.0 14400 < th dose independent rect. 24 14
474 111.72 precipitation 0.1 90 < th dose independent rect. 5 17
475 111.72 wind 3.0 14400 < th dose dependent sin 6 NA
479 111.72 precipitation 0.1 90 < th dose dependent rect. 5 17
490 111.74 wind 3.0 14400 < th dose independent rect. 2 8
492 111.74 wind 3.0 14400 < th dose dependent rect. 8 1
509 111.76 wind 5.0 30 < th dose dependent rect. 22 13
528 111.79 atmosphere 1000.0 90 > th dose independent rect. 17 16
529 111.79 humidity 50.0 90 > th dose dependent rect. 22 7
530 111.80 temperature 15.0 1440 > th dose independent rect. 18 5
536 111.80 wind 3.0 14400 > th dose independent rect. 24 14
541 111.81 wind 3.0 14400 < th dose independent sin 6 NA
549 111.82 wind 3.0 14400 > th dose independent rect. 2 8
561 111.83 humidity 90.0 4320 > th dose independent rect. 7 1
578 111.84 wind 1.0 14400 > th dose independent rect. 4 9
582 111.84 humidity 70.0 4320 > th dose dependent rect. 7 1
586 111.84 wind 9.0 30 < th dose dependent rect. 22 19
600 111.87 wind 1.0 14400 < th dose independent rect. 8 2
604 111.87 wind 3.0 14400 < th dose independent rect. 20 18
606 111.87 humidity 50.0 10 > th dose dependent rect. 22 8
610 111.88 wind 3.0 14400 < th dose independent rect. 2 1
614 111.88 atmosphere 1000.0 720 < th dose dependent rect. 22 7
617 111.89 wind 3.0 14400 > th dose independent sin 6 NA
623 111.89 temperature 15.0 10 > th dose independent rect. 7 23
648 111.91 wind 3.0 14400 < th dose independent rect. 20 14
656 111.91 wind 1.0 30 > th dose dependent rect. 17 16
659 111.92 humidity 70.0 4320 > th dose independent rect. 8 2
691 111.94 wind 1.0 30 > th dose independent rect. 5 17
696 111.94 humidity 60.0 4320 > th dose dependent rect. 7 6
702 111.95 humidity 70.0 4320 < th dose independent rect. 8 2
709 111.95 atmosphere 1000.0 720 < th dose dependent rect. 22 1
716 111.95 humidity 50.0 10 > th dose dependent rect. 22 19
718 111.96 wind 3.0 14400 < th dose independent rect. 5 1
728 111.96 wind 3.0 14400 > th dose independent rect. 20 18
738 111.97 wind 3.0 14400 > th dose independent rect. 5 1
741 111.97 humidity 70.0 4320 > th dose independent rect. 4 6
747 111.97 humidity 70.0 4320 > th dose independent rect. 24 10
749 111.97 humidity 70.0 4320 > th dose independent rect. 21 13
773 111.98 wind 3.0 30 < th dose independent rect. 22 13
789 111.99 temperature 10.0 90 > th dose independent rect. 22 7
790 111.99 temperature 30.0 90 < th dose independent rect. 22 7
791 111.99 humidity 50.0 90 > th dose independent rect. 22 7
794 111.99 atmosphere 995.0 90 > th dose independent rect. 22 7
795 111.99 radiation 20.0 90 < th dose independent rect. 22 7
803 111.99 temperature 10.0 90 > th dose independent rect. 5 17
804 111.99 atmosphere 1015.0 90 < th dose independent rect. 5 17
810 111.99 radiation 20.0 90 < th dose dependent rect. 22 7
817 112.00 radiation 1.0 90 < th dose independent rect. 22 7
825 112.00 humidity 60.0 4320 > th dose dependent rect. 9 1
841 112.01 wind 3.0 14400 > th dose independent rect. 20 13
858 112.01 humidity 80.0 4320 < th dose dependent rect. 21 16
865 112.02 humidity 80.0 4320 < th dose dependent rect. 11 2
870 112.02 humidity 90.0 4320 < th dose dependent rect. 5 8
879 112.03 humidity 80.0 10 > th dose independent rect. 22 16
887 112.03 humidity 90.0 4320 < th dose dependent rect. 7 6
899 112.04 humidity 70.0 4320 < th dose independent sin 7 NA
927 112.05 humidity 90.0 4320 < th dose independent rect. 7 1
931 112.05 humidity 70.0 4320 < th dose independent rect. 8 5
947 112.05 humidity 70.0 4320 < th dose independent rect. 20 17
983 112.06 humidity 90.0 4320 < th dose dependent rect. 9 4
994 112.06 radiation 20.0 10 < th dose dependent rect. 22 8
997 112.07 humidity 70.0 4320 > th dose independent sin 7 NA
1000 112.07 precipitation 0.1 1440 < th dose independent rect. 13 1