Os02g0830100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oligopeptidase A.
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Os02g0830100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oligopeptidase A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.61 | 0.264 | 13.4 | 1.32 | 0.888 | -0.834 | 0.365 | 4.13 | 0.201 | 17.3 | 24.75 | 2621 | -- | -- |
| 37 | 0.283 | 13.5 | 0.287 | 0.864 | -0.48 | 0.358 | -- | 0.0835 | 17.2 | 21.28 | 8417 | -- | -- |
| 31.93 | 0.263 | 13.4 | 1.33 | 0.892 | -0.842 | -- | 4.18 | 0.198 | 17.3 | 24.9 | 2625 | -- | -- |
| 37.06 | 0.284 | 13.5 | 0.284 | 0.873 | -0.478 | -- | -- | 0.0649 | 17 | 21 | 8428 | -- | -- |
| 72.23 | 0.396 | 13.4 | 1.15 | -- | -0.785 | -- | 3.22 | 0.182 | -- | 23.9 | 2703 | -- | -- |
| 44.08 | 0.311 | 13.6 | 0.0284 | 0.908 | -- | 0.314 | -- | -0.124 | 17 | -- | -- | -- | -- |
| 44.33 | 0.312 | 13.6 | 0.0292 | 0.91 | -- | -- | -- | -0.122 | 16.9 | -- | -- | -- | -- |
| 76.55 | 0.407 | 13.5 | 0.225 | -- | -0.545 | -- | -- | -0.035 | -- | 22.48 | 2707 | -- | -- |
| 38.56 | 0.289 | 13.5 | -- | 0.923 | -0.387 | -- | -- | -0.0121 | 17.1 | 22.67 | 8308 | -- | -- |
| 87.93 | 0.438 | 13.6 | -0.00411 | -- | -- | -- | -- | -0.146 | -- | -- | -- | -- | -- |
| 44.36 | 0.312 | 13.6 | -- | 0.909 | -- | -- | -- | -0.126 | 16.9 | -- | -- | -- | -- |
| 77.56 | 0.41 | 13.5 | -- | -- | -0.504 | -- | -- | -0.065 | -- | 22.6 | 2702 | -- | -- |
| 87.93 | 0.438 | 13.6 | -- | -- | -- | -- | -- | -0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 7 | 28.22 | temperature | 20 | 720 | > th | dose dependent | sin | 13 | NA |
| 19 | 28.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 27 | 28.84 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 4 |
| 62 | 29.69 | temperature | 20 | 10 | > th | dose dependent | sin | 10 | NA |
| 122 | 30.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 126 | 30.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 7 |
| 153 | 30.78 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 4 |
| 172 | 30.91 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 6 |
| 202 | 31.07 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 209 | 31.10 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 217 | 31.12 | wind | 3 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 219 | 31.13 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 222 | 31.14 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 225 | 31.15 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 235 | 31.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 14 |
| 248 | 31.24 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 8 |
| 257 | 31.26 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 262 | 31.27 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 280 | 31.35 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 331 | 31.51 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 413 | 31.71 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 444 | 31.78 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 17 |
| 447 | 31.79 | wind | 5 | 43200 | < th | dose independent | sin | 21 | NA |
| 475 | 31.82 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 522 | 31.89 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 536 | 31.91 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 539 | 31.92 | wind | 5 | 43200 | > th | dose independent | sin | 21 | NA |
| 542 | 31.92 | wind | 3 | 43200 | > th | dose dependent | sin | 22 | NA |
| 611 | 32.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 646 | 32.04 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 15 |
| 656 | 32.05 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 16 |
| 663 | 32.06 | temperature | 25 | 720 | < th | dose independent | sin | 13 | NA |
| 733 | 32.15 | temperature | 25 | 720 | > th | dose independent | sin | 14 | NA |
| 823 | 32.24 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 895 | 32.31 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 905 | 32.32 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |