Os02g0830000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os02g0830000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.97 | 0.56 | 5.79 | 1.26 | 0.616 | -1.14 | -0.738 | -0.219 | -0.299 | 20.7 | 29.59 | 273 | -- | -- |
| 141.98 | 0.555 | 5.79 | 1.24 | 0.617 | -1.16 | -0.731 | -- | -0.302 | 20.7 | 29.6 | 270 | -- | -- |
| 143.67 | 0.558 | 5.79 | 1.28 | 0.633 | -1.11 | -- | -0.0645 | -0.299 | 20.5 | 29.53 | 266 | -- | -- |
| 143.67 | 0.558 | 5.79 | 1.27 | 0.633 | -1.11 | -- | -- | -0.303 | 20.5 | 29.53 | 269 | -- | -- |
| 157.62 | 0.585 | 5.79 | 1.28 | -- | -1.3 | -- | -0.441 | -0.385 | -- | 28.96 | 438 | -- | -- |
| 174.78 | 0.62 | 5.8 | 1.45 | 0.995 | -- | 0.0523 | -- | -0.289 | 19 | -- | -- | -- | -- |
| 174.79 | 0.619 | 5.8 | 1.45 | 0.995 | -- | -- | -- | -0.289 | 19 | -- | -- | -- | -- |
| 157.66 | 0.585 | 5.8 | 1.25 | -- | -1.32 | -- | -- | -0.396 | -- | 29 | 438 | -- | -- |
| 185.38 | 0.634 | 5.82 | -- | 0.563 | -1.34 | -- | -- | -0.449 | 21 | 29.5 | 308 | -- | -- |
| 226.83 | 0.704 | 5.77 | 1.43 | -- | -- | -- | -- | -0.307 | -- | -- | -- | -- | -- |
| 230.09 | 0.71 | 5.83 | -- | 0.979 | -- | -- | -- | -0.45 | 19.1 | -- | -- | -- | -- |
| 196.61 | 0.653 | 5.83 | -- | -- | -1.42 | -- | -- | -0.568 | -- | 28.7 | 440 | -- | -- |
| 280.65 | 0.782 | 5.81 | -- | -- | -- | -- | -- | -0.466 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.67 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 17 |
| 2 | 138.24 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 19 |
| 5 | 138.64 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 10 |
| 17 | 140.07 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 22 |
| 43 | 142.91 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 8 |
| 58 | 143.60 | temperature | 30 | 270 | < th | dose independent | sin | 0 | NA |
| 72 | 144.13 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 8 |
| 78 | 144.38 | temperature | 25 | 270 | > th | dose dependent | sin | 22 | NA |
| 83 | 144.50 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 102 | 144.75 | temperature | 30 | 270 | > th | dose independent | sin | 0 | NA |
| 115 | 144.94 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 23 |
| 119 | 144.98 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 9 |
| 121 | 145.00 | temperature | 30 | 270 | > th | dose independent | rect. | 10 | 7 |
| 138 | 145.22 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 216 | 145.90 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 333 | 146.04 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 18 | 7 |
| 378 | 146.63 | temperature | 15 | 270 | > th | dose independent | rect. | 6 | 17 |
| 386 | 146.74 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 16 |
| 401 | 146.85 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 402 | 146.86 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 19 |
| 440 | 147.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 482 | 147.47 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 17 |
| 485 | 147.48 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 8 |
| 532 | 147.69 | temperature | 30 | 90 | < th | dose independent | rect. | 21 | 17 |
| 604 | 148.17 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 634 | 148.32 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 638 | 148.33 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 7 |
| 639 | 148.35 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 646 | 148.37 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 658 | 148.41 | humidity | 70 | 270 | > th | dose independent | rect. | 6 | 19 |
| 701 | 148.85 | radiation | 40 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 710 | 148.91 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 761 | 149.23 | humidity | 60 | 270 | > th | dose independent | rect. | 6 | 17 |
| 784 | 149.34 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 826 | 149.58 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 10 |
| 846 | 149.69 | radiation | 30 | 270 | < th | dose dependent | rect. | 13 | 12 |
| 849 | 149.72 | wind | 7 | 270 | < th | dose independent | rect. | 13 | 16 |
| 850 | 149.72 | radiation | 10 | 270 | < th | dose independent | rect. | 6 | 19 |
| 930 | 150.14 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 8 |
| 944 | 150.21 | radiation | 40 | 270 | < th | dose independent | rect. | 6 | 8 |
| 945 | 150.21 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 15 |
| 950 | 150.22 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 954 | 150.25 | humidity | 70 | 270 | > th | dose independent | rect. | 9 | 16 |
| 964 | 150.29 | radiation | 10 | 270 | < th | dose independent | rect. | 13 | 12 |
| 987 | 150.37 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 23 |
| 988 | 150.37 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 992 | 150.39 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 2 |