Os02g0829900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to BRICK1.
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Os02g0829900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to BRICK1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.35 | 0.279 | 11.8 | -1.05 | 1.57 | -1.07 | -0.116 | -0.284 | -0.196 | 4.46 | 25.4 | 80 | -- | -- |
| 35.46 | 0.277 | 11.8 | -1.09 | 1.57 | -1.04 | -0.199 | -- | -0.209 | 4.46 | 25.57 | 79 | -- | -- |
| 35.38 | 0.277 | 11.8 | -1.04 | 1.57 | -1.07 | -- | -0.34 | -0.194 | 4.46 | 25.42 | 79 | -- | -- |
| 35.56 | 0.278 | 11.8 | -1.09 | 1.58 | -1.04 | -- | -- | -0.209 | 4.46 | 25.64 | 79 | -- | -- |
| 131.55 | 0.534 | 11.9 | -1.34 | -- | -1.19 | -- | 0.824 | -0.287 | -- | 28.99 | 1229 | -- | -- |
| 51.16 | 0.335 | 11.8 | -0.835 | 1.4 | -- | -0.2 | -- | 0.00926 | 4.79 | -- | -- | -- | -- |
| 51.26 | 0.335 | 11.8 | -0.835 | 1.4 | -- | -- | -- | 0.0103 | 4.79 | -- | -- | -- | -- |
| 132.28 | 0.536 | 11.9 | -1.15 | -- | -1.19 | -- | -- | -0.219 | -- | 29.37 | 1237 | -- | -- |
| 63.66 | 0.372 | 11.8 | -- | 1.48 | -0.611 | -- | -- | -0.00566 | 4.61 | 25.4 | 75 | -- | -- |
| 154.54 | 0.581 | 11.8 | -0.782 | -- | -- | -- | -- | 0.0466 | -- | -- | -- | -- | -- |
| 69.62 | 0.39 | 11.8 | -- | 1.38 | -- | -- | -- | 0.103 | 4.81 | -- | -- | -- | -- |
| 162.09 | 0.593 | 11.8 | -- | -- | -0.663 | -- | -- | 0.0365 | -- | 34.9 | 1224 | -- | -- |
| 170.68 | 0.61 | 11.8 | -- | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 3 | 32.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 5 | 32.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 21 |
| 7 | 32.75 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 29 | 33.10 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 38 | 33.33 | temperature | 15 | 720 | > th | dose dependent | sin | 16 | NA |
| 50 | 33.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 81 | 33.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 13 |
| 100 | 33.75 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 102 | 33.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 136 | 34.01 | temperature | 15 | 270 | > th | dose dependent | sin | 11 | NA |
| 162 | 34.11 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 171 | 34.17 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 238 | 34.49 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 314 | 34.83 | temperature | 25 | 270 | < th | dose dependent | sin | 12 | NA |
| 444 | 35.29 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 488 | 35.45 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 491 | 35.46 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 493 | 35.46 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 513 | 35.51 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 569 | 35.67 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 586 | 35.71 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 593 | 35.72 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 604 | 35.74 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 609 | 35.75 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 792 | 36.20 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 10 |
| 831 | 36.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 933 | 36.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |