Os02g0829400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0829400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.37 | 0.283 | 9.35 | 0.918 | 1.13 | 0.963 | -0.363 | -0.558 | 0.125 | 7.45 | 0.9278 | 8571 | -- | -- |
| 36.36 | 0.281 | 9.36 | 0.8 | 1.08 | 1.07 | -0.413 | -- | 0.131 | 7.32 | 0.9837 | 8499 | -- | -- |
| 36.47 | 0.281 | 9.35 | 0.93 | 1.13 | 0.981 | -- | -0.547 | 0.119 | 7.43 | 0.8256 | 8546 | -- | -- |
| 36.71 | 0.282 | 9.35 | 0.833 | 1.09 | 1.08 | -- | -- | 0.115 | 7.35 | 0.8 | 8504 | -- | -- |
| 70.79 | 0.392 | 9.33 | 0.971 | -- | 1.61 | -- | -0.564 | 0.259 | -- | 1.3 | 9496 | -- | -- |
| 52.83 | 0.341 | 9.41 | 0.559 | 1.16 | -- | -0.37 | -- | -0.103 | 7.61 | -- | -- | -- | -- |
| 53.21 | 0.342 | 9.41 | 0.55 | 1.16 | -- | -- | -- | -0.103 | 7.63 | -- | -- | -- | -- |
| 69.65 | 0.389 | 9.35 | 0.934 | -- | 1.82 | -- | -- | 0.297 | -- | 1.31 | 9500 | -- | -- |
| 51.33 | 0.334 | 9.36 | -- | 1.17 | 0.834 | -- | -- | 0.0675 | 7.37 | 1.64 | 8506 | -- | -- |
| 125.6 | 0.524 | 9.44 | 0.566 | -- | -- | -- | -- | -0.0854 | -- | -- | -- | -- | -- |
| 61.19 | 0.366 | 9.42 | -- | 1.16 | -- | -- | -- | -0.164 | 7.6 | -- | -- | -- | -- |
| 89.13 | 0.44 | 9.34 | -- | -- | 1.61 | -- | -- | 0.251 | -- | 1.791 | 9499 | -- | -- |
| 134.05 | 0.54 | 9.45 | -- | -- | -- | -- | -- | -0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.71 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 8 |
| 3 | 33.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 15 |
| 5 | 33.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 15 |
| 11 | 33.89 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 14 | 33.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 162 | 34.52 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 180 | 34.60 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 205 | 34.75 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 210 | 34.77 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 236 | 34.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 238 | 34.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 254 | 34.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 275 | 34.99 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 326 | 35.18 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 351 | 35.32 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 390 | 35.44 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 7 |
| 406 | 35.48 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 417 | 35.51 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 424 | 35.54 | humidity | 90 | 14400 | < th | dose independent | sin | 11 | NA |
| 495 | 35.74 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 517 | 35.78 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 549 | 35.85 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 586 | 35.93 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 610 | 35.99 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 635 | 36.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 645 | 36.06 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 646 | 36.07 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 706 | 36.23 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 745 | 36.31 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 758 | 36.35 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 765 | 36.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 767 | 36.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 773 | 36.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 786 | 36.40 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 812 | 36.46 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 813 | 36.46 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 819 | 36.46 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 836 | 36.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 912 | 36.58 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 942 | 36.64 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 943 | 36.64 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 973 | 36.70 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |