Os02g0829000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0829000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 334.01 | 0.859 | 5.35 | -4.69 | 0.789 | 2.86 | 0.847 | -16.2 | 0.0389 | 8.42 | 32.3 | 1131 | -- | -- |
| 360.02 | 0.884 | 5.06 | -2.19 | 0.746 | 0.836 | 1.08 | -- | 0.022 | 7.9 | 33.9 | 3186 | -- | -- |
| 336.06 | 0.854 | 5.35 | -4.69 | 0.783 | 2.89 | -- | -16.5 | 0.0388 | 8.67 | 32.45 | 1116 | -- | -- |
| 341.5 | 0.861 | 5.07 | -2.2 | 0.764 | 1.09 | -- | -- | 0.0317 | 8.68 | 33.4 | 1059 | -- | -- |
| 368.7 | 0.894 | 5.31 | -4.06 | -- | 2.66 | -- | -14.2 | 0.027 | -- | 33.8 | 1107 | -- | -- |
| 391.97 | 0.928 | 5.11 | -1.99 | 0.715 | -- | 0.989 | -- | -0.136 | 7.63 | -- | -- | -- | -- |
| 394.43 | 0.93 | 5.11 | -1.97 | 0.713 | -- | -- | -- | -0.136 | 8 | -- | -- | -- | -- |
| 374.54 | 0.901 | 5.09 | -2.18 | -- | 1.02 | -- | -- | 0.0287 | -- | 33.6 | 1070 | -- | -- |
| 465.57 | 1 | 5.03 | -- | 0.774 | 0.941 | -- | -- | 0.222 | 8.62 | 33.9 | 1017 | -- | -- |
| 422.23 | 0.96 | 5.12 | -1.96 | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
| 496.42 | 1.04 | 5.06 | -- | 0.702 | -- | -- | -- | 0.0829 | 8.2 | -- | -- | -- | -- |
| 496.33 | 1.04 | 5.05 | -- | -- | 0.77 | -- | -- | 0.224 | -- | 33.7 | 1060 | -- | -- |
| 523.58 | 1.07 | 5.08 | -- | -- | -- | -- | -- | 0.0904 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 325.87 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 15 | 326.16 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 16 | 326.35 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 17 | 327.08 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 18 | 329.26 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 34 | 329.91 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 51 | 332.24 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 52 | 332.25 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 63 | 332.29 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 9 |
| 65 | 332.76 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 124 | 333.37 | humidity | 60 | 720 | < th | dose independent | rect. | 18 | 2 |
| 190 | 335.25 | humidity | 50 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 221 | 335.50 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 12 |
| 244 | 335.65 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 249 | 335.71 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 251 | 335.74 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 329 | 336.32 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 353 | 336.70 | humidity | 50 | 1440 | > th | dose independent | sin | 12 | NA |
| 393 | 337.34 | humidity | 50 | 1440 | < th | dose independent | sin | 11 | NA |
| 440 | 337.68 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 456 | 337.75 | humidity | 50 | 1440 | > th | dose independent | rect. | 19 | 22 |
| 458 | 337.77 | humidity | 50 | 1440 | > th | dose independent | rect. | 21 | 20 |
| 463 | 337.78 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 470 | 337.88 | humidity | 50 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 489 | 338.06 | humidity | 50 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 494 | 338.11 | humidity | 50 | 1440 | > th | dose independent | rect. | 2 | 15 |
| 498 | 338.16 | humidity | 60 | 1440 | < th | dose dependent | sin | 12 | NA |
| 514 | 338.26 | humidity | 50 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 523 | 338.39 | humidity | 50 | 1440 | > th | dose independent | rect. | 13 | 14 |
| 547 | 338.48 | humidity | 50 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 549 | 338.52 | radiation | 10 | 1440 | > th | dose independent | sin | 14 | NA |
| 555 | 338.55 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 558 | 338.57 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 603 | 338.94 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 1 |
| 605 | 338.99 | wind | 9 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 609 | 339.17 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 643 | 339.70 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 644 | 339.72 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 677 | 339.81 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 731 | 340.19 | temperature | 30 | 1440 | > th | dose dependent | sin | 12 | NA |
| 734 | 340.23 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 736 | 340.27 | wind | 9 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 754 | 340.43 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 5 |
| 775 | 340.56 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 4 |
| 819 | 340.71 | wind | 9 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 853 | 340.97 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 864 | 341.06 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 865 | 341.07 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 867 | 341.12 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 10 |
| 873 | 341.16 | humidity | 50 | 1440 | > th | dose independent | rect. | 10 | 17 |
| 881 | 341.19 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 21 |
| 899 | 341.26 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 911 | 341.32 | humidity | 50 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 923 | 341.35 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 953 | 341.40 | humidity | 50 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 958 | 341.42 | wind | 9 | 14400 | > th | dose independent | rect. | 1 | 15 |
| 960 | 341.42 | humidity | 50 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 962 | 341.43 | humidity | 50 | 1440 | > th | dose independent | no | NA | NA |
| 974 | 341.47 | wind | 9 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 977 | 341.48 | wind | 9 | 14400 | > th | dose dependent | rect. | 1 | 15 |