Os02g0828600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0828600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.13 | 0.361 | 8.4 | 1.39 | 0.725 | -0.753 | -1.24 | 3.09 | 0.7 | 16.1 | 25.8 | 87 | -- | -- |
| 61.7 | 0.369 | 8.44 | 1.05 | 0.675 | -0.51 | -0.861 | -- | 0.618 | 16 | 26 | 129 | -- | -- |
| 62.42 | 0.368 | 8.42 | 1.31 | 0.704 | -0.927 | -- | 3.37 | 0.633 | 16.4 | 27.6 | 123 | -- | -- |
| 63.65 | 0.372 | 8.44 | 1.05 | 0.72 | -0.56 | -- | -- | 0.615 | 16.4 | 25.85 | 123 | -- | -- |
| 81.52 | 0.423 | 8.42 | 1.1 | -- | -0.234 | -- | 2.06 | 0.603 | -- | 27.6 | 123 | -- | -- |
| 65.62 | 0.38 | 8.44 | 0.98 | 0.511 | -- | -1.05 | -- | 0.597 | 16.3 | -- | -- | -- | -- |
| 68.6 | 0.388 | 8.44 | 0.971 | 0.507 | -- | -- | -- | 0.591 | 16.5 | -- | -- | -- | -- |
| 81.53 | 0.421 | 8.45 | 0.917 | -- | 0.17 | -- | -- | 0.548 | -- | 22.43 | 161 | -- | -- |
| 91.57 | 0.446 | 8.47 | -- | 0.595 | -0.358 | -- | -- | 0.479 | 16.5 | 27.65 | 128 | -- | -- |
| 82.31 | 0.424 | 8.44 | 0.951 | -- | -- | -- | -- | 0.578 | -- | -- | -- | -- | -- |
| 93.43 | 0.452 | 8.47 | -- | 0.489 | -- | -- | -- | 0.483 | 16.6 | -- | -- | -- | -- |
| 101.54 | 0.469 | 8.48 | -- | -- | 0.475 | -- | -- | 0.413 | -- | 17.3 | 165 | -- | -- |
| 106.16 | 0.481 | 8.46 | -- | -- | -- | -- | -- | 0.472 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.83 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 3 | 58.23 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 4 | 58.31 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 5 | 58.34 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 16 | 58.92 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 38 | 59.09 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 40 | 59.11 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 14 |
| 47 | 59.29 | temperature | 25 | 90 | > th | dose dependent | rect. | 6 | 12 |
| 48 | 59.29 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 15 |
| 54 | 59.32 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 56 | 59.33 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 20 |
| 59 | 59.34 | temperature | 25 | 90 | > th | dose dependent | rect. | 6 | 17 |
| 65 | 59.35 | temperature | 25 | 90 | > th | dose dependent | sin | 23 | NA |
| 77 | 59.40 | temperature | 10 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 86 | 59.42 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 12 | 23 |
| 89 | 59.45 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 13 |
| 91 | 59.45 | wind | 3 | 4320 | > th | dose dependent | rect. | 13 | 17 |
| 98 | 59.47 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 104 | 59.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 108 | 59.50 | wind | 3 | 4320 | > th | dose dependent | rect. | 13 | 14 |
| 110 | 59.51 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 119 | 59.53 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 155 | 59.58 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 11 |
| 161 | 59.59 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 13 |
| 173 | 59.61 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 11 |
| 174 | 59.61 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 13 |
| 190 | 59.65 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 198 | 59.66 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 11 | 14 |
| 234 | 59.71 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 299 | 59.78 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 10 |
| 316 | 59.79 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 331 | 59.80 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 354 | 59.82 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 12 | 23 |
| 355 | 59.82 | wind | 3 | 4320 | > th | dose dependent | sin | 15 | NA |
| 445 | 59.89 | temperature | 15 | 30 | > th | dose independent | rect. | 12 | 23 |
| 487 | 59.93 | wind | 5 | 4320 | < th | dose independent | sin | 15 | NA |
| 488 | 59.93 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 494 | 59.94 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 509 | 59.95 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 534 | 59.97 | wind | 5 | 4320 | > th | dose independent | sin | 15 | NA |
| 632 | 60.05 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 750 | 60.17 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 756 | 60.18 | wind | 1 | 30 | > th | dose independent | rect. | 11 | 14 |
| 778 | 60.19 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 791 | 60.20 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 809 | 60.22 | wind | 1 | 4320 | > th | dose dependent | rect. | 16 | 3 |
| 844 | 60.24 | wind | 7 | 30 | < th | dose independent | rect. | 12 | 23 |
| 859 | 60.25 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 861 | 60.25 | wind | 9 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 888 | 60.26 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 12 |
| 936 | 60.29 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 12 |
| 955 | 60.30 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 967 | 60.31 | wind | 5 | 4320 | > th | dose independent | rect. | 21 | 22 |
| 977 | 60.32 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 982 | 60.32 | wind | 5 | 4320 | < th | dose independent | rect. | 21 | 22 |
| 994 | 60.33 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 11 | 14 |