Os02g0828200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0828200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.65 | 0.395 | 11.8 | 0.112 | 2.2 | 1.19 | 0.0495 | -1.5 | -0.07 | 14 | 24.8 | 993 | -- | -- |
| 75.92 | 0.406 | 11.8 | -0.177 | 2.18 | 1.3 | -0.344 | -- | -0.0654 | 14 | 24.71 | 1004 | -- | -- |
| 70.65 | 0.391 | 11.8 | 0.109 | 2.2 | 1.19 | -- | -1.48 | -0.0708 | 14 | 24.83 | 998 | -- | -- |
| 75.21 | 0.404 | 11.8 | -0.282 | 2.27 | 1.2 | -- | -- | -0.11 | 14.1 | 24.8 | 941 | -- | -- |
| 320.11 | 0.833 | 11.7 | 0.747 | -- | 2.33 | -- | -3.01 | 0.374 | -- | 25.16 | 1003 | -- | -- |
| 111.69 | 0.495 | 11.9 | -0.675 | 2.53 | -- | -0.189 | -- | -0.611 | 13.7 | -- | -- | -- | -- |
| 111.83 | 0.495 | 11.9 | -0.681 | 2.53 | -- | -- | -- | -0.612 | 13.7 | -- | -- | -- | -- |
| 332.64 | 0.849 | 11.8 | -0.109 | -- | 2.12 | -- | -- | 0.0899 | -- | 25 | 992 | -- | -- |
| 76.77 | 0.408 | 11.8 | -- | 2.21 | 1.15 | -- | -- | -0.148 | 14 | 24.8 | 984 | -- | -- |
| 500.56 | 1.05 | 11.9 | -0.784 | -- | -- | -- | -- | -0.669 | -- | -- | -- | -- | -- |
| 124.06 | 0.521 | 11.9 | -- | 2.54 | -- | -- | -- | -0.536 | 13.7 | -- | -- | -- | -- |
| 332.72 | 0.85 | 11.8 | -- | -- | 2.19 | -- | -- | 0.12 | -- | 25.12 | 1004 | -- | -- |
| 516.76 | 1.06 | 11.9 | -- | -- | -- | -- | -- | -0.582 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.69 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 15 |
| 4 | 68.60 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |
| 5 | 68.67 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 9 | 68.96 | temperature | 20 | 270 | > th | dose dependent | sin | 12 | NA |
| 12 | 69.09 | temperature | 25 | 270 | < th | dose dependent | sin | 14 | NA |
| 15 | 69.17 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 14 |
| 24 | 69.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 32 | 69.69 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 10 |
| 34 | 69.71 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 37 | 69.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 47 | 70.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 64 | 70.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 65 | 70.29 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 95 | 70.87 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 7 |
| 113 | 71.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 126 | 71.29 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 154 | 71.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 164 | 71.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 178 | 71.59 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 323 | 72.57 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 487 | 73.48 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 494 | 73.50 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 573 | 73.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 604 | 74.04 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 638 | 74.23 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 648 | 74.25 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 660 | 74.28 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 20 |
| 714 | 74.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 778 | 74.75 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 799 | 74.81 | humidity | 60 | 43200 | < th | dose dependent | sin | 9 | NA |
| 803 | 74.82 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 22 |
| 826 | 74.89 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 17 |
| 844 | 74.93 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 867 | 74.99 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 870 | 74.99 | humidity | 60 | 43200 | < th | dose dependent | sin | 7 | NA |
| 893 | 75.04 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 940 | 75.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 950 | 75.18 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 963 | 75.22 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 976 | 75.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 982 | 75.27 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 23 |