Os02g0826400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0826400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.37 | 0.232 | 14.4 | 0.926 | 0.98 | 0.315 | -0.154 | 0.584 | 0.65 | 0.0789 | 70.04 | 1444 | -- | -- |
| 25.31 | 0.234 | 14.4 | 0.944 | 0.977 | 0.308 | -0.157 | -- | 0.654 | 0.0183 | 70.14 | 1393 | -- | -- |
| 24.25 | 0.229 | 14.4 | 0.928 | 1.03 | 0.342 | -- | 0.641 | 0.644 | 0.138 | 70 | 1275 | -- | -- |
| 25.08 | 0.233 | 14.4 | 1.01 | 1.02 | 0.357 | -- | -- | 0.686 | 0.131 | 70.74 | 1295 | -- | -- |
| 54.49 | 0.346 | 14.4 | 1.02 | -- | 0.589 | -- | 0.0477 | 0.647 | -- | 74 | 4513 | -- | -- |
| 29.81 | 0.256 | 14.4 | 0.937 | 0.973 | -- | -0.215 | -- | 0.628 | 0.0284 | -- | -- | -- | -- |
| 30.01 | 0.257 | 14.4 | 0.946 | 0.973 | -- | -- | -- | 0.629 | 0.0466 | -- | -- | -- | -- |
| 54.5 | 0.345 | 14.4 | 1.02 | -- | 0.589 | -- | -- | 0.648 | -- | 74 | 4513 | -- | -- |
| 31.83 | 0.263 | 14.4 | -- | 0.982 | 1.01 | -- | -- | 0.552 | 0.097 | 63.82 | 30321 | -- | -- |
| 89.66 | 0.442 | 14.4 | 0.976 | -- | -- | -- | -- | 0.643 | -- | -- | -- | -- | -- |
| 53.58 | 0.342 | 14.4 | -- | 0.986 | -- | -- | -- | 0.523 | 0.101 | -- | -- | -- | -- |
| 82.08 | 0.423 | 14.4 | -- | -- | 0.568 | -- | -- | 0.534 | -- | 74 | 4513 | -- | -- |
| 114.8 | 0.5 | 14.4 | -- | -- | -- | -- | -- | 0.534 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.06 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 0 | NA |
| 2 | 23.06 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 0 | NA |
| 3 | 23.06 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 4 | 23.06 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 5 | 23.06 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 0 | NA |
| 6 | 23.07 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 7 | 23.07 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 15 |
| 8 | 23.08 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 9 | 23.08 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 9 |
| 11 | 23.10 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 13 | 23.10 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 17 | 23.11 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 29 | 23.13 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 58 | 23.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 84 | 23.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 18 |
| 87 | 23.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 17 |
| 107 | 23.37 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 114 | 23.37 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 121 | 23.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 164 | 23.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 177 | 23.47 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 254 | 23.57 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 269 | 23.60 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 272 | 23.61 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 279 | 23.62 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 302 | 23.65 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 303 | 23.65 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 304 | 23.65 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 410 | 23.70 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 421 | 23.71 | humidity | 60.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 486 | 23.74 | humidity | 60.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 496 | 23.74 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 533 | 23.76 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 561 | 23.78 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 566 | 23.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 596 | 23.79 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 608 | 23.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 610 | 23.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 621 | 23.81 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 647 | 23.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 657 | 23.83 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 14 | 4 |
| 765 | 23.88 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 766 | 23.88 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 811 | 23.88 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 825 | 23.89 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 919 | 23.91 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 23 |