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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0826300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.21 (0.069) R2 : 0.567
β1 : 0.625 (0.282) R2dD : 0.0149 R2D : -0.115
β2 : 1.13 (0.108) R2dC : 0.105 R2C : 0.113
β3 : -6.66 (0.629) R2dE : 1.07 R2E : -0.397
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -21.5 (3.04) R2dD*E : 0.498 R2D*E : -0.55
γ1 : 1.42 (0.1) R2dN8 : 0.295 R2N8 : 0.0977
σ : 0.82
deviance : 309.76
__
_____
C
peak time of C : 2.58
E
wheather : radiation
threshold : 0.6073
memory length : 4319
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.99
open length of G : 3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
303.06 0.818 4.29 0.582 1.13 -6.62 -1.41 -21.5 1.37 2.38 0.9736 4320 2 3
398.89 0.93 3.74 0.338 0.982 -5.78 -1.35 -- 1.81 2.44 0.7625 4310 2.18 2.93
309.76 0.82 4.21 0.625 1.13 -6.66 -- -21.5 1.42 2.58 0.6073 4319 1.99 3
377.63 0.905 3.77 0.32 0.923 -5.17 -- -- 1.82 2.42 1.18 4313 2.17 2.92
374.65 0.901 4.23 0.615 -- -6.84 -- -21.4 1.45 -- 0.9226 4317 1.99 2.99
415.96 0.956 3.93 -1.8 1.18 -- -1.45 -- 1.06 2.44 -- -- -- --
423.35 0.964 3.92 -1.76 1.18 -- -- -- 1.06 2.64 -- -- -- --
397.77 0.929 3.81 0.115 -- -4.58 -- -- 1.67 -- 1.024 4306 2.17 2.99
341.15 0.86 3.8 -- 0.948 -3.76 -- -- 1.55 2.01 0.6457 4311 2.25 2.87
504.62 1.05 3.92 -1.71 -- -- -- -- 1.09 -- -- -- -- --
505.39 1.05 3.88 -- 1.15 -- -- -- 1.26 2.62 -- -- -- --
391.34 0.921 3.81 -- -- -4.02 -- -- 1.57 -- 1.033 4306 2.16 3
582.13 1.13 3.87 -- -- -- -- -- 1.28 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 305.32 wind 1 43200 > th dose independent rect. 2 1
2 309.37 radiation 1 4320 < th dose dependent rect. 2 3
3 309.56 radiation 1 4320 < th dose dependent rect. 4 1
10 313.06 wind 1 43200 < th dose independent rect. 2 1
13 314.14 radiation 1 43200 < th dose dependent rect. 21 8
23 315.06 radiation 10 14400 > th dose dependent rect. 6 1
24 315.20 humidity 70 43200 < th dose independent rect. 10 1
37 316.21 radiation 1 4320 < th dose dependent rect. 18 11
39 316.44 humidity 70 43200 > th dose independent rect. 9 2
45 316.90 radiation 10 43200 > th dose independent rect. 5 4
64 317.77 radiation 10 43200 > th dose independent rect. 6 1
82 318.24 wind 1 43200 < th dose dependent rect. 21 1
83 318.27 wind 5 43200 < th dose independent rect. 14 3
85 318.38 radiation 1 4320 < th dose dependent rect. 18 1
86 318.42 wind 5 43200 < th dose independent rect. 16 1
87 318.45 wind 5 43200 < th dose independent rect. 14 1
90 318.50 radiation 20 14400 < th dose independent rect. 18 14
91 318.54 radiation 20 14400 < th dose independent rect. 3 5
93 318.55 radiation 20 14400 < th dose independent rect. 1 7
98 318.59 radiation 1 4320 < th dose dependent rect. 18 4
99 318.61 radiation 20 14400 < th dose independent rect. 22 10
100 318.61 radiation 1 4320 < th dose dependent rect. 18 7
128 318.88 radiation 1 43200 < th dose independent rect. 18 1
130 318.93 radiation 1 43200 < th dose independent rect. 18 10
132 318.94 radiation 1 43200 < th dose independent rect. 18 7
134 318.95 radiation 1 43200 < th dose independent rect. 18 4
141 319.02 humidity 90 14400 > th dose independent rect. 23 5
144 319.22 radiation 10 43200 < th dose independent rect. 13 1
145 319.23 humidity 90 14400 > th dose independent rect. 23 7
162 319.56 wind 1 43200 > th dose independent rect. 19 1
164 319.64 radiation 20 43200 > th dose independent rect. 9 1
168 319.72 atmosphere 1005 43200 < th dose independent rect. 21 1
170 319.78 wind 5 43200 > th dose independent rect. 14 3
176 319.91 wind 5 43200 > th dose independent rect. 14 1
181 320.03 wind 3 43200 > th dose dependent rect. 14 3
262 320.99 wind 9 43200 < th dose dependent rect. 14 1
264 321.02 humidity 90 14400 > th dose dependent rect. 4 2
285 321.53 radiation 10 43200 < th dose independent rect. 10 1
287 321.56 wind 1 43200 < th dose independent rect. 4 4
305 321.61 radiation 10 43200 > th dose independent sin 9 NA
307 321.65 wind 1 43200 < th dose independent rect. 19 1
320 321.98 humidity 80 43200 < th dose dependent rect. 10 2
322 322.03 atmosphere 1005 43200 > th dose independent rect. 21 1
369 322.29 radiation 10 43200 < th dose independent rect. 10 4
381 322.36 radiation 30 43200 < th dose dependent rect. 9 2
435 322.72 radiation 20 43200 < th dose dependent rect. 8 6
441 322.79 atmosphere 1005 43200 < th dose independent rect. 19 16
453 322.97 atmosphere 1005 43200 > th dose independent rect. 21 4
464 323.02 wind 1 43200 < th dose independent rect. 21 1
465 323.03 atmosphere 1005 43200 > th dose independent rect. 19 6
526 323.35 atmosphere 1005 43200 < th dose independent rect. 9 2
543 323.55 atmosphere 1005 43200 > th dose independent rect. 24 1
546 323.56 radiation 1 43200 < th dose independent rect. 20 9
554 323.62 wind 1 43200 < th dose dependent rect. 6 1
555 323.64 humidity 60 43200 > th dose independent rect. 12 1
578 323.78 wind 1 43200 < th dose dependent rect. 19 3
583 323.84 atmosphere 1005 43200 < th dose independent sin 10 NA
625 324.07 radiation 1 43200 < th dose independent rect. 24 5
674 324.31 atmosphere 1005 43200 > th dose independent rect. 19 16
697 324.40 atmosphere 1005 43200 > th dose independent rect. 19 18
748 324.65 atmosphere 1005 43200 > th dose independent rect. 9 2
814 324.83 radiation 1 43200 < th dose independent rect. 2 3
821 324.87 atmosphere 1005 43200 > th dose independent rect. 9 4
824 324.89 humidity 70 43200 < th dose independent sin 1 NA
829 324.91 radiation 1 14400 > th dose independent rect. 18 1
858 324.99 atmosphere 1005 43200 > th dose independent sin 10 NA
882 325.09 radiation 1 43200 > th dose dependent rect. 9 1
895 325.14 wind 1 43200 < th dose independent rect. 7 1
896 325.14 radiation 1 43200 < th dose independent rect. 4 1
937 325.31 humidity 90 14400 > th dose dependent rect. 23 7