Os02g0824000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os02g0824000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 196.84 | 0.659 | 3.21 | -0.17 | 0.2 | 1.89 | 0.078 | -17.3 | 0.279 | 4.94 | 30.1 | 6 | -- | -- |
| 201.99 | 0.667 | 3.15 | 0.392 | 0.189 | -0.149 | 0.105 | -- | 0.269 | 5.15 | 30.1 | 6 | -- | -- |
| 196.86 | 0.653 | 3.21 | -0.171 | 0.201 | 1.89 | -- | -17.3 | 0.278 | 4.92 | 30.1 | 5 | -- | -- |
| 200.04 | 0.659 | 3.15 | 0.447 | 0.0369 | -0.366 | -- | -- | 0.28 | 6.43 | 26.35 | 421 | -- | -- |
| 198.83 | 0.657 | 3.22 | -0.157 | -- | 1.76 | -- | -17.3 | 0.28 | -- | 30.1 | 5 | -- | -- |
| 202.16 | 0.667 | 3.15 | 0.385 | 0.203 | -- | 0.137 | -- | 0.274 | 5.03 | -- | -- | -- | -- |
| 202.21 | 0.666 | 3.15 | 0.385 | 0.204 | -- | -- | -- | 0.274 | 5.02 | -- | -- | -- | -- |
| 200.07 | 0.659 | 3.15 | 0.451 | -- | -0.394 | -- | -- | 0.286 | -- | 26.4 | 452 | -- | -- |
| 205 | 0.667 | 3.16 | -- | 0.0881 | -0.279 | -- | -- | 0.233 | 6.26 | 26.9 | 411 | -- | -- |
| 204.39 | 0.668 | 3.15 | 0.392 | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
| 206.11 | 0.672 | 3.16 | -- | 0.211 | -- | -- | -- | 0.231 | 4.96 | -- | -- | -- | -- |
| 205.26 | 0.667 | 3.16 | -- | -- | -0.342 | -- | -- | 0.233 | -- | 26.6 | 413 | -- | -- |
| 208.44 | 0.674 | 3.16 | -- | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 192.57 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 192.64 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 3 | 193.16 | wind | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 4 | 193.76 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 6 | 193.81 | temperature | 30.0 | 10 | > th | dose independent | rect. | 10 | 2 |
| 8 | 193.96 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 5 | 2 |
| 9 | 193.97 | temperature | 30.0 | 10 | > th | dose independent | rect. | 18 | 18 |
| 43 | 194.09 | temperature | 30.0 | 90 | > th | dose independent | rect. | 11 | 1 |
| 44 | 194.16 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 65 | 194.33 | temperature | 30.0 | 10 | > th | dose independent | rect. | 16 | 20 |
| 157 | 194.82 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 2 |
| 158 | 194.85 | temperature | 30.0 | 10 | > th | dose independent | rect. | 14 | 22 |
| 163 | 194.95 | temperature | 30.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 168 | 195.04 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 206 | 195.21 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 208 | 195.25 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 213 | 195.29 | wind | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 215 | 195.30 | radiation | 40.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 236 | 195.35 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 237 | 195.35 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 239 | 195.38 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 241 | 195.38 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 257 | 195.53 | wind | 1.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 259 | 195.56 | wind | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 260 | 195.56 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 271 | 195.64 | wind | 1.0 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 274 | 195.68 | radiation | 1.0 | 30 | < th | dose independent | rect. | 5 | 2 |
| 283 | 195.78 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 284 | 195.78 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 285 | 195.78 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 286 | 195.78 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 287 | 195.80 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 289 | 195.81 | wind | 1.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 315 | 196.03 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 21 | 3 |
| 316 | 196.03 | wind | 1.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 318 | 196.03 | wind | 1.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 320 | 196.03 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 325 | 196.08 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 332 | 196.09 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 5 |
| 339 | 196.13 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 13 |
| 340 | 196.14 | temperature | 30.0 | 30 | > th | dose independent | sin | 8 | NA |
| 347 | 196.15 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 10 |
| 348 | 196.15 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 11 |
| 367 | 196.18 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 371 | 196.19 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 9 |
| 374 | 196.20 | wind | 1.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 382 | 196.25 | wind | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 402 | 196.34 | wind | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 416 | 196.41 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 417 | 196.41 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 14 | 22 |
| 423 | 196.43 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 18 | 14 |
| 424 | 196.43 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 452 | 196.49 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 463 | 196.51 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 6 |
| 475 | 196.55 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 477 | 196.55 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 479 | 196.56 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 484 | 196.57 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 487 | 196.58 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 1 | 2 |
| 491 | 196.58 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 497 | 196.60 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 504 | 196.61 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 505 | 196.61 | wind | 1.0 | 30 | < th | dose dependent | rect. | 5 | 7 |
| 535 | 196.65 | wind | 1.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 546 | 196.67 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 10 |
| 548 | 196.67 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 10 |
| 551 | 196.68 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 10 |
| 598 | 196.73 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 13 |
| 601 | 196.73 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 602 | 196.73 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 13 |
| 603 | 196.74 | temperature | 25.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 604 | 196.74 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 13 |
| 653 | 196.82 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 669 | 196.82 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 4 |
| 670 | 196.83 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 679 | 196.85 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 714 | 196.90 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 750 | 196.93 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 753 | 196.93 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 757 | 196.93 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 763 | 196.93 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 764 | 196.93 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 787 | 196.93 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 791 | 196.94 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 804 | 196.94 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 806 | 196.94 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 23 |
| 807 | 196.95 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 810 | 196.95 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 811 | 196.95 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 812 | 196.95 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 11 |
| 816 | 196.95 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 817 | 196.95 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 829 | 196.97 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 832 | 196.98 | radiation | 1.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 837 | 196.99 | radiation | 1.0 | 1440 | > th | dose independent | sin | 8 | NA |
| 838 | 196.99 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 888 | 197.00 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 6 | 6 |
| 929 | 197.03 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 943 | 197.04 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 945 | 197.05 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 968 | 197.07 | wind | 7.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 987 | 197.10 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 992 | 197.11 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |