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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0822900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.89 (0.0608) R2 : 0.35
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.22 (0.157) R2dC : 0.334 R2C : 0.133
β3 : -2.51 (0.224) R2dE : 0.209 R2E : 0.0104
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.193 (0.128) R2dN8 : 0.00425 R2N8 : 0.00489
σ : 1.14
deviance : 599.33
__
_____
C
peak time of C : 23
E
wheather : temperature
threshold : 25.3
memory length : 881
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
586.33 1.14 3.8 0.224 2.27 -2.95 -0.527 5.08 -0.0672 22.5 25.37 779 -- --
591.67 1.13 3.88 -0.449 2.23 -2.44 -0.0103 -- -0.238 23 25.4 881 -- --
586.53 1.13 3.78 0.409 2.28 -2.9 -- 5.3 -0.0468 22.9 25.4 859 -- --
590.95 1.13 3.9 -0.539 2.21 -2.42 -- -- -0.249 23 25.39 869 -- --
786.68 1.31 3.82 -0.499 -- -2.22 -- 3.22 -0.211 -- 25.4 859 -- --
721.63 1.26 3.92 -1.18 1.59 -- -0.701 -- -0.429 23.9 -- -- -- --
723.76 1.26 3.92 -1.15 1.59 -- -- -- -0.426 23.9 -- -- -- --
787.36 1.31 3.85 -0.835 -- -2.01 -- -- -0.282 -- 25.2 1588 -- --
599.33 1.14 3.89 -- 2.22 -2.51 -- -- -0.193 23 25.3 881 -- --
883.72 1.39 3.88 -1.1 -- -- -- -- -0.405 -- -- -- -- --
758.6 1.29 3.89 -- 1.58 -- -- -- -0.298 23.8 -- -- -- --
805.42 1.33 3.83 -- -- -2.13 -- -- -0.184 -- 25.2 1588 -- --
915.75 1.41 3.85 -- -- -- -- -- -0.283 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 577.67 temperature 25 720 > th dose dependent rect. 13 15
3 577.70 temperature 25 720 > th dose dependent rect. 13 10
30 580.09 temperature 25 720 > th dose dependent sin 18 NA
121 590.48 temperature 25 720 > th dose dependent no NA NA
123 590.52 temperature 25 720 > th dose dependent rect. 2 23
165 592.99 temperature 25 720 > th dose dependent rect. 16 23
213 597.65 radiation 1 720 > th dose independent sin 16 NA
235 600.26 radiation 1 720 < th dose independent sin 20 NA
240 600.86 humidity 50 720 > th dose dependent rect. 15 6
259 602.90 radiation 1 720 > th dose independent rect. 13 6
277 603.54 radiation 1 720 < th dose independent rect. 10 17
280 603.56 radiation 1 720 < th dose independent rect. 13 14
281 603.66 radiation 1 720 < th dose independent rect. 9 10
289 604.18 humidity 90 720 < th dose dependent rect. 15 10
303 605.04 radiation 20 43200 < th dose dependent rect. 19 10
309 605.26 temperature 25 270 > th dose independent rect. 13 11
310 605.28 humidity 90 720 < th dose dependent rect. 15 13
311 605.33 radiation 10 43200 < th dose dependent rect. 1 4
318 605.48 radiation 10 43200 < th dose dependent rect. 23 6
324 605.65 radiation 10 43200 < th dose dependent rect. 3 2
335 606.01 temperature 25 90 > th dose independent sin 16 NA
349 606.41 radiation 1 720 < th dose dependent rect. 8 11
366 606.78 wind 9 43200 > th dose independent rect. 11 11
367 606.84 wind 7 43200 > th dose independent rect. 13 1
370 606.90 radiation 1 720 > th dose independent rect. 11 8
381 606.92 radiation 1 43200 < th dose independent rect. 1 4
390 607.27 radiation 1 43200 < th dose independent rect. 19 10
391 607.28 radiation 1 43200 < th dose independent rect. 23 6
392 607.30 radiation 1 43200 < th dose independent rect. 3 2
399 607.46 temperature 25 270 > th dose independent sin 18 NA
403 607.56 radiation 1 720 < th dose dependent sin 21 NA
404 607.57 radiation 1 43200 < th dose independent rect. 21 8
415 607.77 humidity 90 720 < th dose dependent sin 15 NA
416 607.78 wind 9 43200 < th dose independent rect. 11 11
429 608.28 radiation 1 43200 > th dose independent rect. 4 1
439 608.28 radiation 1 43200 > th dose dependent rect. 4 1
451 608.31 wind 9 43200 > th dose independent rect. 14 8
453 608.37 temperature 30 720 < th dose independent rect. 12 8
457 608.43 wind 9 43200 > th dose independent rect. 14 6
468 608.61 temperature 30 720 > th dose independent rect. 13 6
484 608.75 wind 7 43200 > th dose dependent rect. 11 7
512 609.41 wind 9 43200 < th dose independent rect. 14 4
533 609.99 wind 9 43200 < th dose independent rect. 12 6
535 610.03 temperature 30 720 < th dose independent sin 15 NA
540 610.05 radiation 10 43200 < th dose independent rect. 18 12
541 610.05 radiation 1 720 > th dose independent rect. 9 21
553 610.15 radiation 1 720 > th dose independent rect. 16 14
554 610.16 temperature 30 720 < th dose independent rect. 15 14
557 610.19 radiation 1 43200 < th dose dependent rect. 8 6
564 610.26 humidity 80 43200 > th dose dependent rect. 20 5
570 610.37 temperature 30 720 < th dose independent rect. 15 7
572 610.40 radiation 1 43200 > th dose independent rect. 8 5
580 610.56 wind 7 43200 < th dose independent rect. 13 1
588 610.62 radiation 1 43200 < th dose independent rect. 8 5
594 610.72 radiation 1 720 < th dose dependent rect. 5 14
602 610.92 temperature 30 720 > th dose independent sin 15 NA
609 611.03 radiation 1 43200 < th dose dependent rect. 9 4
615 611.09 humidity 80 43200 > th dose dependent rect. 17 11
616 611.10 humidity 90 43200 < th dose independent rect. 21 8
623 611.36 wind 9 43200 > th dose dependent rect. 14 8
639 611.62 humidity 80 43200 > th dose dependent rect. 19 8
641 611.67 wind 9 43200 > th dose dependent rect. 11 11
656 612.00 wind 9 43200 < th dose independent rect. 14 8
658 612.03 temperature 30 720 < th dose independent rect. 12 16
672 612.26 wind 7 43200 < th dose independent rect. 17 1
673 612.29 humidity 90 43200 < th dose independent rect. 23 5
679 612.35 radiation 10 43200 < th dose independent rect. 18 4
682 612.38 radiation 1 43200 > th dose independent rect. 9 1
684 612.40 radiation 10 43200 < th dose independent rect. 18 8
689 612.42 radiation 10 43200 < th dose independent rect. 18 6
690 612.43 radiation 10 43200 < th dose independent rect. 18 2
699 612.55 radiation 1 43200 < th dose independent rect. 9 1
742 612.89 radiation 1 43200 > th dose independent rect. 9 3
749 612.96 humidity 90 43200 < th dose independent rect. 24 1
775 613.43 radiation 1 720 < th dose independent rect. 11 19
779 613.46 radiation 40 43200 < th dose independent rect. 17 15
785 613.51 radiation 40 43200 < th dose independent rect. 6 2
790 613.58 wind 7 43200 > th dose dependent rect. 12 2
794 613.61 radiation 40 43200 < th dose independent rect. 1 7
798 613.67 radiation 40 43200 < th dose independent rect. 23 9
816 613.84 radiation 40 43200 < th dose independent rect. 3 5
820 613.90 radiation 40 43200 < th dose independent rect. 21 11
839 614.06 radiation 1 720 > th dose independent rect. 7 23
892 614.79 humidity 80 720 > th dose independent rect. 11 11
930 615.14 radiation 1 720 < th dose independent rect. 5 14
998 615.86 humidity 80 43200 > th dose dependent sin 13 NA
999 615.87 radiation 1 43200 > th dose dependent rect. 18 1