Os02g0822600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chloroplast 50S ribosomal protein L9 (Fragment).
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Os02g0822600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chloroplast 50S ribosomal protein L9 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.62 | 0.366 | 13.7 | -0.366 | 1.66 | 0.696 | 0.154 | 2.11 | -0.657 | 22.4 | 29.75 | 357 | -- | -- |
| 64.48 | 0.374 | 13.7 | -0.412 | 1.65 | 0.715 | -0.106 | -- | -0.681 | 22.5 | 30.87 | 438 | -- | -- |
| 60.65 | 0.363 | 13.7 | -0.371 | 1.65 | 0.684 | -- | 2 | -0.658 | 22.4 | 30.33 | 366 | -- | -- |
| 64.5 | 0.374 | 13.7 | -0.424 | 1.64 | 0.675 | -- | -- | -0.68 | 22.4 | 30 | 439 | -- | -- |
| 141.07 | 0.553 | 13.7 | -0.495 | -- | 1.64 | -- | 0.817 | -0.83 | -- | -0.3381 | 1015 | -- | -- |
| 71.35 | 0.396 | 13.7 | -0.399 | 1.65 | -- | -0.0851 | -- | -0.618 | 21.7 | -- | -- | -- | -- |
| 71.38 | 0.396 | 13.7 | -0.396 | 1.65 | -- | -- | -- | -0.618 | 21.7 | -- | -- | -- | -- |
| 141.26 | 0.554 | 13.7 | -0.553 | -- | 1.64 | -- | -- | -0.856 | -- | -0.006888 | 1013 | -- | -- |
| 69.29 | 0.388 | 13.7 | -- | 1.64 | 0.653 | -- | -- | -0.626 | 22.4 | 30.04 | 429 | -- | -- |
| 233.75 | 0.714 | 13.7 | -0.381 | -- | -- | -- | -- | -0.621 | -- | -- | -- | -- | -- |
| 75.5 | 0.406 | 13.7 | -- | 1.65 | -- | -- | -- | -0.574 | 21.7 | -- | -- | -- | -- |
| 149.26 | 0.569 | 13.7 | -- | -- | 1.6 | -- | -- | -0.787 | -- | -2.106 | 1009 | -- | -- |
| 237.57 | 0.719 | 13.7 | -- | -- | -- | -- | -- | -0.578 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.00 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 8 |
| 3 | 57.47 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 9 |
| 6 | 57.99 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 22 |
| 8 | 58.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 8 |
| 9 | 58.39 | radiation | 30 | 270 | < th | dose independent | rect. | 4 | 8 |
| 10 | 58.44 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 10 |
| 12 | 58.61 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 9 |
| 60 | 59.68 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 17 |
| 70 | 59.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 18 |
| 71 | 59.83 | radiation | 40 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 73 | 59.84 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 12 |
| 81 | 59.93 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 83 | 59.94 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 19 |
| 87 | 59.95 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 88 | 59.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 89 | 59.97 | radiation | 40 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 94 | 60.00 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 96 | 60.01 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 97 | 60.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 101 | 60.02 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 108 | 60.05 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 109 | 60.06 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 110 | 60.06 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 115 | 60.08 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 19 |
| 120 | 60.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 130 | 60.16 | humidity | 80 | 43200 | > th | dose dependent | sin | 12 | NA |
| 136 | 60.18 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 138 | 60.18 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 10 |
| 164 | 60.27 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 176 | 60.30 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 196 | 60.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 8 | 16 |
| 202 | 60.38 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 18 |
| 210 | 60.40 | humidity | 80 | 14400 | > th | dose dependent | rect. | 16 | 6 |
| 213 | 60.41 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 215 | 60.41 | humidity | 90 | 14400 | > th | dose dependent | sin | 22 | NA |
| 219 | 60.42 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 225 | 60.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 17 |
| 235 | 60.47 | humidity | 80 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 237 | 60.47 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 246 | 60.48 | temperature | 25 | 90 | > th | dose dependent | rect. | 10 | 19 |
| 247 | 60.48 | humidity | 70 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 265 | 60.52 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 289 | 60.55 | humidity | 80 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 303 | 60.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 305 | 60.57 | humidity | 90 | 14400 | < th | dose independent | rect. | 8 | 16 |
| 308 | 60.57 | humidity | 80 | 14400 | > th | dose dependent | rect. | 9 | 13 |
| 327 | 60.60 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 13 |
| 394 | 60.70 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 493 | 60.84 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 511 | 60.87 | wind | 5 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 538 | 60.90 | humidity | 90 | 14400 | > th | dose independent | sin | 19 | NA |
| 540 | 60.90 | humidity | 90 | 14400 | < th | dose independent | sin | 20 | NA |
| 541 | 60.90 | wind | 5 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 601 | 60.95 | humidity | 90 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 637 | 60.98 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 19 |
| 665 | 61.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 719 | 61.04 | humidity | 70 | 43200 | > th | dose dependent | rect. | 22 | 20 |
| 721 | 61.05 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 727 | 61.05 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 17 |
| 760 | 61.08 | humidity | 60 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 763 | 61.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 772 | 61.09 | humidity | 70 | 43200 | > th | dose dependent | rect. | 23 | 17 |
| 788 | 61.10 | humidity | 60 | 14400 | > th | dose dependent | rect. | 8 | 14 |
| 872 | 61.16 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 908 | 61.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 18 |
| 953 | 61.21 | radiation | 40 | 270 | < th | dose independent | rect. | 16 | 23 |
| 954 | 61.21 | wind | 5 | 14400 | > th | dose dependent | rect. | 7 | 2 |